Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0049

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0048 and Psest_0049 are separated by 186 nucleotidesPsest_0049 and Psest_0050 are separated by 155 nucleotidesPsest_0050 and Psest_0051 are separated by 193 nucleotidesPsest_0051 and Psest_0052 are separated by 10 nucleotides Psest_0048: Psest_0048 - ABC-type multidrug transport system, ATPase and permease components, at 50,929 to 52,764 _0048 Psest_0049: Psest_0049 - Uncharacterized conserved protein, at 52,951 to 53,556 _0049 Psest_0050: Psest_0050 - Predicted acetyltransferase, at 53,712 to 53,993 _0050 Psest_0051: Psest_0051 - hypothetical protein, at 54,187 to 54,516 _0051 Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279 _0052 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 52.350 kb on + strand, within Psest_0048at 52.714 kb on + strandat 52.714 kb on + strandat 52.715 kb on - strandat 52.715 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.866 kb on + strandat 52.866 kb on + strandat 52.866 kb on + strandat 52.867 kb on - strandat 52.867 kb on - strandat 52.979 kb on + strandat 52.980 kb on - strandat 52.980 kb on - strandat 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.054 kb on + strand, within Psest_0049at 53.054 kb on + strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.108 kb on + strand, within Psest_0049at 53.108 kb on + strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.131 kb on + strand, within Psest_0049at 53.131 kb on + strand, within Psest_0049at 53.131 kb on + strand, within Psest_0049at 53.132 kb on - strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.286 kb on + strand, within Psest_0049at 53.286 kb on + strand, within Psest_0049at 53.286 kb on + strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.361 kb on + strand, within Psest_0049at 53.362 kb on - strand, within Psest_0049at 53.362 kb on - strand, within Psest_0049at 53.596 kb on - strandat 53.659 kb on + strandat 53.659 kb on + strandat 53.659 kb on + strandat 53.660 kb on - strandat 53.660 kb on - strandat 53.676 kb on + strandat 53.676 kb on + strandat 53.676 kb on + strandat 53.677 kb on - strandat 53.761 kb on - strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.946 kb on + strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.947 kb on - strand, within Psest_0050at 53.999 kb on - strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.019 kb on + strandat 54.020 kb on - strandat 54.040 kb on + strandat 54.041 kb on - strandat 54.134 kb on - strandat 54.218 kb on + strandat 54.219 kb on - strandat 54.276 kb on + strand, within Psest_0051at 54.276 kb on + strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.277 kb on - strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.433 kb on + strand, within Psest_0051at 54.434 kb on - strand, within Psest_0051at 54.434 kb on - strand, within Psest_0051at 54.434 kb on - strand, within Psest_0051at 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.489 kb on - strandat 54.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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52,350 + Psest_0048 0.77 +0.9
52,714 + +0.6
52,714 + +0.7
52,715 - +0.3
52,715 - +3.3
52,814 - +2.8
52,814 - -2.5
52,814 - -0.3
52,814 - +1.7
52,814 - +1.0
52,866 + +2.0
52,866 + +1.7
52,866 + +1.6
52,867 - -0.3
52,867 - -1.3
52,979 + -0.7
52,980 - +0.5
52,980 - +0.6
53,031 + Psest_0049 0.13 +1.2
53,031 + Psest_0049 0.13 +1.0
53,031 + Psest_0049 0.13 -0.2
53,031 + Psest_0049 0.13 -0.5
53,031 + Psest_0049 0.13 -0.5
53,032 - Psest_0049 0.13 -1.1
53,032 - Psest_0049 0.13 -0.3
53,032 - Psest_0049 0.13 +0.8
53,032 - Psest_0049 0.13 -1.9
53,032 - Psest_0049 0.13 -2.0
53,032 - Psest_0049 0.13 -0.7
53,032 - Psest_0049 0.13 -0.9
53,032 - Psest_0049 0.13 -1.7
53,032 - Psest_0049 0.13 +1.1
53,032 - Psest_0049 0.13 -1.2
53,032 - Psest_0049 0.13 -0.9
53,032 - Psest_0049 0.13 -0.3
53,032 - Psest_0049 0.13 +1.0
53,032 - Psest_0049 0.13 +0.8
53,054 + Psest_0049 0.17 +0.4
53,054 + Psest_0049 0.17 +0.5
53,055 - Psest_0049 0.17 -0.5
53,055 - Psest_0049 0.17 -0.1
53,055 - Psest_0049 0.17 -1.4
53,055 - Psest_0049 0.17 -2.5
53,055 - Psest_0049 0.17 +0.2
53,055 - Psest_0049 0.17 -0.2
53,108 + Psest_0049 0.26 +0.7
53,108 + Psest_0049 0.26 -0.4
53,109 - Psest_0049 0.26 -1.4
53,109 - Psest_0049 0.26 -1.1
53,109 - Psest_0049 0.26 -0.8
53,109 - Psest_0049 0.26 -0.7
53,113 - Psest_0049 0.27 +1.1
53,113 - Psest_0049 0.27 +1.5
53,113 - Psest_0049 0.27 -1.2
53,113 - Psest_0049 0.27 -1.5
53,131 + Psest_0049 0.30 +0.3
53,131 + Psest_0049 0.30 +0.7
53,131 + Psest_0049 0.30 +0.5
53,132 - Psest_0049 0.30 -0.4
53,147 + Psest_0049 0.32 -0.5
53,147 + Psest_0049 0.32 -1.3
53,147 + Psest_0049 0.32 +1.7
53,147 + Psest_0049 0.32 +1.3
53,147 + Psest_0049 0.32 -0.2
53,147 + Psest_0049 0.32 +1.2
53,147 + Psest_0049 0.32 -1.0
53,147 + Psest_0049 0.32 +0.0
53,147 + Psest_0049 0.32 -0.5
53,147 + Psest_0049 0.32 -1.5
53,147 + Psest_0049 0.32 +0.9
53,147 + Psest_0049 0.32 -2.6
53,147 + Psest_0049 0.32 -1.1
53,147 + Psest_0049 0.32 +1.0
53,147 + Psest_0049 0.32 -1.2
53,147 + Psest_0049 0.32 +0.4
53,148 - Psest_0049 0.33 -0.5
53,148 - Psest_0049 0.33 +0.8
53,148 - Psest_0049 0.33 -1.8
53,148 - Psest_0049 0.33 -0.7
53,148 - Psest_0049 0.33 -1.7
53,148 - Psest_0049 0.33 -0.8
53,148 - Psest_0049 0.33 +5.7
53,148 - Psest_0049 0.33 -2.7
53,148 - Psest_0049 0.33 -1.6
53,148 - Psest_0049 0.33 +1.0
53,148 - Psest_0049 0.33 +0.6
53,148 - Psest_0049 0.33 +0.4
53,149 + Psest_0049 0.33 -0.1
53,149 + Psest_0049 0.33 -2.7
53,149 + Psest_0049 0.33 +1.3
53,149 + Psest_0049 0.33 -0.9
53,149 + Psest_0049 0.33 +2.4
53,149 + Psest_0049 0.33 +2.2
53,149 + Psest_0049 0.33 -0.1
53,149 + Psest_0049 0.33 +0.4
53,149 + Psest_0049 0.33 -0.3
53,149 + Psest_0049 0.33 -1.3
53,149 + Psest_0049 0.33 +1.4
53,149 + Psest_0049 0.33 +0.3
53,149 + Psest_0049 0.33 -0.3
53,149 + Psest_0049 0.33 +1.5
53,149 + Psest_0049 0.33 -2.1
53,150 - Psest_0049 0.33 -2.8
53,150 - Psest_0049 0.33 -0.9
53,150 - Psest_0049 0.33 +2.3
53,150 - Psest_0049 0.33 -0.6
53,150 - Psest_0049 0.33 -0.5
53,211 + Psest_0049 0.43 +0.5
53,211 + Psest_0049 0.43 -1.1
53,211 + Psest_0049 0.43 -0.7
53,211 + Psest_0049 0.43 -0.2
53,211 + Psest_0049 0.43 +0.5
53,212 - Psest_0049 0.43 +1.0
53,212 - Psest_0049 0.43 -1.8
53,212 - Psest_0049 0.43 -0.9
53,212 - Psest_0049 0.43 -0.2
53,212 - Psest_0049 0.43 -0.1
53,212 - Psest_0049 0.43 +0.7
53,212 - Psest_0049 0.43 -1.1
53,212 - Psest_0049 0.43 -0.4
53,212 - Psest_0049 0.43 -3.1
53,212 - Psest_0049 0.43 -0.1
53,284 + Psest_0049 0.55 -0.3
53,284 + Psest_0049 0.55 -0.2
53,284 + Psest_0049 0.55 -0.7
53,284 + Psest_0049 0.55 -1.9
53,284 + Psest_0049 0.55 -0.9
53,284 + Psest_0049 0.55 -0.5
53,284 + Psest_0049 0.55 -0.9
53,284 + Psest_0049 0.55 +1.1
53,284 + Psest_0049 0.55 +0.1
53,284 + Psest_0049 0.55 -1.8
53,285 - Psest_0049 0.55 -1.4
53,285 - Psest_0049 0.55 -1.5
53,285 - Psest_0049 0.55 +1.4
53,285 - Psest_0049 0.55 +2.0
53,285 - Psest_0049 0.55 +1.7
53,285 - Psest_0049 0.55 -2.0
53,285 - Psest_0049 0.55 -0.4
53,285 - Psest_0049 0.55 -1.7
53,285 - Psest_0049 0.55 +1.9
53,285 - Psest_0049 0.55 +0.3
53,285 - Psest_0049 0.55 +2.2
53,285 - Psest_0049 0.55 -1.6
53,285 - Psest_0049 0.55 +0.9
53,286 + Psest_0049 0.55 +0.2
53,286 + Psest_0049 0.55 -2.2
53,286 + Psest_0049 0.55 +1.2
53,287 - Psest_0049 0.55 +0.9
53,287 - Psest_0049 0.55 -2.1
53,287 - Psest_0049 0.55 -2.0
53,287 - Psest_0049 0.55 +0.7
53,287 - Psest_0049 0.55 -1.6
53,361 + Psest_0049 0.68 +0.7
53,362 - Psest_0049 0.68 +1.2
53,362 - Psest_0049 0.68 -3.7
53,596 - -0.9
53,659 + -0.7
53,659 + -0.8
53,659 + -1.5
53,660 - -1.3
53,660 - +3.5
53,676 + +1.3
53,676 + +0.2
53,676 + +0.1
53,677 - -0.2
53,761 - Psest_0050 0.17 +1.3
53,946 + Psest_0050 0.83 -1.3
53,946 + Psest_0050 0.83 -0.8
53,946 + Psest_0050 0.83 -1.5
53,946 + Psest_0050 0.83 +1.0
53,946 + Psest_0050 0.83 +1.0
53,947 - Psest_0050 0.83 -1.5
53,947 - Psest_0050 0.83 -1.2
53,947 - Psest_0050 0.83 +1.0
53,947 - Psest_0050 0.83 +5.7
53,947 - Psest_0050 0.83 +0.7
53,999 - +1.1
54,019 + +0.8
54,019 + -1.1
54,019 + -1.3
54,019 + -1.6
54,019 + +0.3
54,019 + +0.9
54,020 - -0.1
54,040 + -2.1
54,041 - +0.7
54,134 - -1.2
54,218 + +1.0
54,219 - +1.0
54,276 + Psest_0051 0.27 +1.1
54,276 + Psest_0051 0.27 +1.6
54,277 - Psest_0051 0.27 +5.6
54,277 - Psest_0051 0.27 +1.9
54,277 - Psest_0051 0.27 -2.5
54,277 - Psest_0051 0.27 +0.9
54,433 + Psest_0051 0.75 -0.9
54,433 + Psest_0051 0.75 +3.7
54,433 + Psest_0051 0.75 -1.0
54,433 + Psest_0051 0.75 +0.1
54,434 - Psest_0051 0.75 -1.3
54,434 - Psest_0051 0.75 -1.9
54,434 - Psest_0051 0.75 -1.2
54,488 + +0.7
54,488 + +1.2
54,488 + +0.3
54,488 + +0.9
54,488 + +0.6
54,489 - -1.5
54,489 - +0.8

Or see this region's nucleotide sequence