Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0445 and Psest_0446 are separated by 110 nucleotides Psest_0446 and Psest_0447 are separated by 108 nucleotides Psest_0447 and Psest_0448 are separated by 24 nucleotides
Psest_0445: Psest_0445 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 484,818 to 487,490
_0445
Psest_0446: Psest_0446 - hypothetical protein, at 487,601 to 488,128
_0446
Psest_0447: Psest_0447 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 488,237 to 490,240
_0447
Psest_0448: Psest_0448 - pyruvate dehydrogenase E1 component, homodimeric type, at 490,265 to 492,910
_0448
Position (kb) 488
489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 487.248 kb on - strand at 487.479 kb on - strand at 487.482 kb on + strand at 487.482 kb on + strand at 487.482 kb on + strand at 487.483 kb on - strand at 487.483 kb on - strand at 487.483 kb on - strand at 487.510 kb on - strand at 487.510 kb on - strand at 487.510 kb on - strand at 487.571 kb on - strand at 487.575 kb on - strand at 487.581 kb on - strand at 487.635 kb on + strand at 487.636 kb on - strand at 487.721 kb on + strand, within Psest_0446 at 487.721 kb on + strand, within Psest_0446 at 487.722 kb on - strand, within Psest_0446 at 487.722 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.789 kb on + strand, within Psest_0446 at 487.789 kb on + strand, within Psest_0446 at 487.790 kb on - strand, within Psest_0446 at 487.790 kb on - strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.824 kb on - strand, within Psest_0446 at 487.974 kb on - strand, within Psest_0446 at 487.983 kb on - strand, within Psest_0446 at 488.005 kb on + strand, within Psest_0446 at 488.252 kb on - strand at 490.244 kb on - strand at 490.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 487,248 - -0.0 487,479 - +1.6 487,482 + +1.4 487,482 + -0.4 487,482 + -1.3 487,483 - +0.1 487,483 - -0.2 487,483 - -1.8 487,510 - +0.9 487,510 - +1.7 487,510 - +2.8 487,571 - +0.1 487,575 - +0.1 487,581 - +1.5 487,635 + -1.2 487,636 - +1.1 487,721 + Psest_0446 0.23 -1.9 487,721 + Psest_0446 0.23 -0.3 487,722 - Psest_0446 0.23 +1.5 487,722 - Psest_0446 0.23 +0.3 487,746 - Psest_0446 0.27 +1.8 487,746 - Psest_0446 0.27 -0.3 487,746 - Psest_0446 0.27 +2.4 487,746 - Psest_0446 0.27 +1.9 487,789 + Psest_0446 0.36 +0.4 487,789 + Psest_0446 0.36 +2.7 487,790 - Psest_0446 0.36 +2.5 487,790 - Psest_0446 0.36 +1.6 487,805 + Psest_0446 0.39 -0.0 487,805 + Psest_0446 0.39 +1.4 487,805 + Psest_0446 0.39 +0.1 487,805 + Psest_0446 0.39 +3.6 487,805 + Psest_0446 0.39 +0.0 487,805 + Psest_0446 0.39 -0.4 487,805 + Psest_0446 0.39 +0.5 487,805 + Psest_0446 0.39 -2.8 487,806 - Psest_0446 0.39 +2.1 487,806 - Psest_0446 0.39 +2.2 487,806 - Psest_0446 0.39 +1.1 487,806 - Psest_0446 0.39 +1.0 487,806 - Psest_0446 0.39 -2.5 487,806 - Psest_0446 0.39 +3.3 487,806 - Psest_0446 0.39 +2.6 487,806 - Psest_0446 0.39 +1.8 487,824 - Psest_0446 0.42 +2.8 487,974 - Psest_0446 0.71 +0.8 487,983 - Psest_0446 0.72 +0.4 488,005 + Psest_0446 0.77 +1.1 488,252 - +7.0 490,244 - +0.9 490,244 - +6.3
Or see this region's nucleotide sequence