Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4234

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4233 and Psest_4234 are separated by 12 nucleotidesPsest_4234 and Psest_4235 are separated by 43 nucleotides Psest_4233: Psest_4233 - Acyl-CoA dehydrogenases, at 4,414,867 to 4,416,009 _4233 Psest_4234: Psest_4234 - Acyl-CoA dehydrogenases, at 4,416,022 to 4,417,218 _4234 Psest_4235: Psest_4235 - 3-hydroxyacyl-CoA dehydrogenase, at 4,417,262 to 4,419,367 _4235 Position (kb) 4416 4417 4418Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.225 kb on + strand, within Psest_4233at 4415.225 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.616 kb on - strand, within Psest_4233at 4416.023 kb on + strandat 4416.024 kb on - strandat 4416.107 kb on + strandat 4416.107 kb on + strandat 4416.107 kb on + strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.132 kb on - strandat 4416.132 kb on - strandat 4416.158 kb on + strand, within Psest_4234at 4416.159 kb on - strand, within Psest_4234at 4416.228 kb on + strand, within Psest_4234at 4416.228 kb on + strand, within Psest_4234at 4416.229 kb on - strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.504 kb on - strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.768 kb on - strand, within Psest_4234at 4416.871 kb on - strand, within Psest_4234at 4416.881 kb on + strand, within Psest_4234at 4416.882 kb on - strand, within Psest_4234at 4417.053 kb on - strand, within Psest_4234at 4417.053 kb on - strand, within Psest_4234at 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.206 kb on - strandat 4417.206 kb on - strandat 4417.206 kb on - strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.407 kb on + strandat 4417.407 kb on + strandat 4417.408 kb on - strandat 4417.408 kb on - strandat 4417.408 kb on - strandat 4417.456 kb on - strandat 4417.456 kb on - strandat 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.609 kb on + strand, within Psest_4235at 4417.609 kb on + strand, within Psest_4235at 4417.609 kb on + strand, within Psest_4235at 4417.610 kb on - strand, within Psest_4235at 4417.656 kb on + strand, within Psest_4235

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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4,415,048 + Psest_4233 0.16 -0.1
4,415,048 + Psest_4233 0.16 -0.6
4,415,048 + Psest_4233 0.16 +0.9
4,415,048 + Psest_4233 0.16 -1.4
4,415,048 + Psest_4233 0.16 -0.1
4,415,048 + Psest_4233 0.16 -3.4
4,415,048 + Psest_4233 0.16 -1.3
4,415,048 + Psest_4233 0.16 -0.8
4,415,048 + Psest_4233 0.16 +0.3
4,415,048 + Psest_4233 0.16 -0.7
4,415,048 + Psest_4233 0.16 +0.5
4,415,048 + Psest_4233 0.16 +0.1
4,415,048 + Psest_4233 0.16 -0.9
4,415,048 + Psest_4233 0.16 +0.5
4,415,049 - Psest_4233 0.16 -1.3
4,415,049 - Psest_4233 0.16 -2.3
4,415,049 - Psest_4233 0.16 -1.1
4,415,049 - Psest_4233 0.16 -0.8
4,415,049 - Psest_4233 0.16 +0.9
4,415,049 - Psest_4233 0.16 -1.4
4,415,049 - Psest_4233 0.16 -3.1
4,415,049 - Psest_4233 0.16 +0.9
4,415,049 - Psest_4233 0.16 +2.5
4,415,049 - Psest_4233 0.16 -0.0
4,415,049 - Psest_4233 0.16 -1.5
4,415,049 - Psest_4233 0.16 -1.6
4,415,049 - Psest_4233 0.16 +0.4
4,415,225 + Psest_4233 0.31 +0.9
4,415,225 + Psest_4233 0.31 +0.9
4,415,599 + Psest_4233 0.64 -0.1
4,415,599 + Psest_4233 0.64 +1.2
4,415,599 + Psest_4233 0.64 +2.0
4,415,599 + Psest_4233 0.64 +0.5
4,415,599 + Psest_4233 0.64 -1.1
4,415,600 - Psest_4233 0.64 -1.8
4,415,600 - Psest_4233 0.64 +1.5
4,415,600 - Psest_4233 0.64 +0.2
4,415,600 - Psest_4233 0.64 -0.8
4,415,616 - Psest_4233 0.66 -0.8
4,416,023 + -1.6
4,416,024 - +1.0
4,416,107 + +0.2
4,416,107 + -1.8
4,416,107 + -2.3
4,416,108 - -1.8
4,416,108 - +1.5
4,416,108 - -0.7
4,416,108 - +0.4
4,416,108 - -0.3
4,416,132 - +1.9
4,416,132 - -2.8
4,416,158 + Psest_4234 0.11 -1.2
4,416,159 - Psest_4234 0.11 +1.4
4,416,228 + Psest_4234 0.17 -2.5
4,416,228 + Psest_4234 0.17 +0.8
4,416,229 - Psest_4234 0.17 +0.3
4,416,503 + Psest_4234 0.40 -0.8
4,416,503 + Psest_4234 0.40 -1.5
4,416,503 + Psest_4234 0.40 +1.2
4,416,504 - Psest_4234 0.40 -2.9
4,416,767 + Psest_4234 0.62 -1.2
4,416,767 + Psest_4234 0.62 -1.7
4,416,767 + Psest_4234 0.62 -1.9
4,416,767 + Psest_4234 0.62 -1.5
4,416,767 + Psest_4234 0.62 -1.9
4,416,768 - Psest_4234 0.62 +0.7
4,416,871 - Psest_4234 0.71 -0.2
4,416,881 + Psest_4234 0.72 -1.4
4,416,882 - Psest_4234 0.72 -0.9
4,417,053 - Psest_4234 0.86 +1.2
4,417,053 - Psest_4234 0.86 +0.7
4,417,205 + +0.6
4,417,205 + -2.1
4,417,205 + -1.2
4,417,205 + +1.9
4,417,205 + -1.0
4,417,205 + -0.5
4,417,205 + -1.3
4,417,205 + +0.3
4,417,205 + +1.2
4,417,206 - +1.3
4,417,206 - +0.8
4,417,206 - -2.1
4,417,263 + -0.0
4,417,263 + -0.4
4,417,263 + +0.5
4,417,263 + +0.5
4,417,263 + -1.1
4,417,263 + +1.0
4,417,263 + -1.1
4,417,263 + -0.4
4,417,264 - +1.0
4,417,264 - -1.1
4,417,264 - -1.3
4,417,264 - -1.9
4,417,264 - +0.5
4,417,407 + -2.4
4,417,407 + -0.9
4,417,408 - -0.2
4,417,408 - -0.3
4,417,408 - +3.2
4,417,456 - +0.0
4,417,456 - +0.6
4,417,551 + Psest_4235 0.14 -1.1
4,417,551 + Psest_4235 0.14 -0.8
4,417,551 + Psest_4235 0.14 -0.8
4,417,551 + Psest_4235 0.14 -2.5
4,417,551 + Psest_4235 0.14 +0.1
4,417,551 + Psest_4235 0.14 -1.8
4,417,551 + Psest_4235 0.14 -1.9
4,417,551 + Psest_4235 0.14 +1.5
4,417,551 + Psest_4235 0.14 -1.1
4,417,551 + Psest_4235 0.14 +2.5
4,417,551 + Psest_4235 0.14 +0.6
4,417,551 + Psest_4235 0.14 +0.0
4,417,551 + Psest_4235 0.14 +0.2
4,417,551 + Psest_4235 0.14 +0.0
4,417,551 + Psest_4235 0.14 -0.3
4,417,551 + Psest_4235 0.14 -3.3
4,417,552 - Psest_4235 0.14 +0.7
4,417,552 - Psest_4235 0.14 +0.6
4,417,552 - Psest_4235 0.14 +0.9
4,417,552 - Psest_4235 0.14 -1.3
4,417,552 - Psest_4235 0.14 -2.1
4,417,552 - Psest_4235 0.14 -1.9
4,417,552 - Psest_4235 0.14 -2.2
4,417,552 - Psest_4235 0.14 +0.9
4,417,552 - Psest_4235 0.14 -1.9
4,417,552 - Psest_4235 0.14 -2.0
4,417,552 - Psest_4235 0.14 -2.1
4,417,552 - Psest_4235 0.14 -0.3
4,417,552 - Psest_4235 0.14 +2.6
4,417,552 - Psest_4235 0.14 +1.0
4,417,552 - Psest_4235 0.14 +1.5
4,417,552 - Psest_4235 0.14 -2.0
4,417,552 - Psest_4235 0.14 -0.6
4,417,609 + Psest_4235 0.16 +0.9
4,417,609 + Psest_4235 0.16 +0.6
4,417,609 + Psest_4235 0.16 +0.4
4,417,610 - Psest_4235 0.17 +0.4
4,417,656 + Psest_4235 0.19 +1.1

Or see this region's nucleotide sequence