Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0364 and Psest_0365 are separated by 41 nucleotides Psest_0365 and Psest_0366 are separated by 377 nucleotides Psest_0366 and Psest_0367 overlap by 11 nucleotides
Psest_0364: Psest_0364 - Gluconolactonase, at 390,412 to 391,302
_0364
Psest_0365: Psest_0365 - NAD dependent epimerase/dehydratase family., at 391,344 to 392,159
_0365
Psest_0366: Psest_0366 - Predicted membrane protein, at 392,537 to 392,845
_0366
Psest_0367: Psest_0367 - Predicted branched-chain amino acid permease (azaleucine resistance), at 392,835 to 393,551
_0367
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 390.755 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 391.217 kb on + strand at 391.323 kb on + strand at 391.324 kb on - strand at 391.324 kb on - strand at 391.384 kb on + strand at 391.384 kb on + strand at 391.385 kb on - strand at 391.385 kb on - strand at 391.385 kb on - strand at 391.385 kb on - strand at 391.385 kb on - strand at 391.385 kb on - strand at 391.411 kb on + strand at 391.412 kb on - strand at 391.528 kb on + strand, within Psest_0365 at 391.687 kb on + strand, within Psest_0365 at 391.687 kb on + strand, within Psest_0365 at 391.688 kb on - strand, within Psest_0365 at 391.688 kb on - strand, within Psest_0365 at 391.688 kb on - strand, within Psest_0365 at 391.690 kb on + strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.691 kb on - strand, within Psest_0365 at 391.732 kb on + strand, within Psest_0365 at 391.735 kb on + strand, within Psest_0365 at 391.736 kb on - strand, within Psest_0365 at 391.736 kb on - strand, within Psest_0365 at 391.855 kb on + strand, within Psest_0365 at 391.856 kb on - strand, within Psest_0365 at 391.856 kb on - strand, within Psest_0365 at 391.856 kb on - strand, within Psest_0365 at 391.859 kb on + strand, within Psest_0365 at 391.859 kb on + strand, within Psest_0365 at 391.860 kb on - strand, within Psest_0365 at 392.065 kb on + strand, within Psest_0365 at 392.154 kb on - strand at 392.215 kb on - strand at 392.272 kb on + strand at 392.272 kb on + strand at 392.272 kb on + strand at 392.272 kb on + strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.273 kb on - strand at 392.274 kb on + strand at 392.274 kb on + strand at 392.275 kb on - strand at 392.275 kb on - strand at 392.275 kb on - strand at 392.313 kb on + strand at 392.313 kb on + strand at 392.313 kb on + strand at 392.314 kb on - strand at 392.314 kb on - strand at 392.314 kb on - strand at 392.482 kb on - strand at 392.923 kb on + strand, within Psest_0367
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 390,755 + Psest_0364 0.38 +1.2 390,803 + Psest_0364 0.44 +0.9 390,803 + Psest_0364 0.44 +1.8 390,803 + Psest_0364 0.44 -0.7 390,803 + Psest_0364 0.44 +1.8 390,803 + Psest_0364 0.44 +0.9 390,803 + Psest_0364 0.44 +0.8 390,804 - Psest_0364 0.44 -0.5 390,804 - Psest_0364 0.44 -1.0 390,804 - Psest_0364 0.44 -0.5 390,804 - Psest_0364 0.44 -0.5 390,804 - Psest_0364 0.44 -0.8 390,804 - Psest_0364 0.44 +1.3 390,804 - Psest_0364 0.44 -1.4 390,804 - Psest_0364 0.44 +1.8 390,804 - Psest_0364 0.44 -0.4 390,804 - Psest_0364 0.44 +2.5 391,217 + +0.2 391,323 + +0.6 391,324 - -1.4 391,324 - +2.8 391,384 + +1.0 391,384 + -2.1 391,385 - +0.1 391,385 - +0.9 391,385 - +0.6 391,385 - +1.1 391,385 - +1.3 391,385 - +3.8 391,411 + +0.1 391,412 - +0.7 391,528 + Psest_0365 0.23 +0.4 391,687 + Psest_0365 0.42 -2.8 391,687 + Psest_0365 0.42 -0.7 391,688 - Psest_0365 0.42 +0.5 391,688 - Psest_0365 0.42 -0.4 391,688 - Psest_0365 0.42 +0.3 391,690 + Psest_0365 0.42 -2.6 391,691 - Psest_0365 0.43 +1.3 391,691 - Psest_0365 0.43 -0.1 391,691 - Psest_0365 0.43 -0.6 391,691 - Psest_0365 0.43 -1.9 391,691 - Psest_0365 0.43 -1.7 391,691 - Psest_0365 0.43 +1.9 391,691 - Psest_0365 0.43 -1.8 391,732 + Psest_0365 0.48 -1.0 391,735 + Psest_0365 0.48 -1.3 391,736 - Psest_0365 0.48 -2.8 391,736 - Psest_0365 0.48 -1.7 391,855 + Psest_0365 0.63 -2.1 391,856 - Psest_0365 0.63 -0.3 391,856 - Psest_0365 0.63 -0.8 391,856 - Psest_0365 0.63 -0.4 391,859 + Psest_0365 0.63 -0.2 391,859 + Psest_0365 0.63 +2.8 391,860 - Psest_0365 0.63 -1.1 392,065 + Psest_0365 0.88 -1.7 392,154 - -1.7 392,215 - -1.9 392,272 + -0.8 392,272 + +0.3 392,272 + +0.4 392,272 + +0.9 392,273 - -3.0 392,273 - -1.4 392,273 - -0.2 392,273 - -1.0 392,273 - +1.4 392,273 - -1.0 392,273 - +0.2 392,273 - +2.0 392,273 - +0.6 392,273 - -0.2 392,273 - -0.3 392,273 - -0.4 392,273 - -0.8 392,273 - +0.9 392,273 - -0.1 392,273 - +0.1 392,273 - -0.3 392,273 - +1.7 392,273 - -0.2 392,273 - +0.2 392,274 + +0.5 392,274 + +1.6 392,275 - -1.3 392,275 - -0.0 392,275 - -1.2 392,313 + -0.7 392,313 + -1.8 392,313 + +0.1 392,314 - +0.6 392,314 - -0.4 392,314 - -1.1 392,482 - +3.9 392,923 + Psest_0367 0.12 -0.4
Or see this region's nucleotide sequence