Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2582

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2580 and Psest_2581 are separated by 98 nucleotidesPsest_2581 and Psest_2582 overlap by 17 nucleotidesPsest_2582 and Psest_2583 overlap by 4 nucleotides Psest_2580: Psest_2580 - Uncharacterized membrane protein, required for colicin V production, at 2,760,778 to 2,761,323 _2580 Psest_2581: Psest_2581 - Uncharacterized protein conserved in bacteria, at 2,761,422 to 2,762,054 _2581 Psest_2582: Psest_2582 - folylpolyglutamate synthase/dihydrofolate synthase, at 2,762,038 to 2,763,342 _2582 Psest_2583: Psest_2583 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 2,763,339 to 2,764,232 _2583 Position (kb) 2762 2763 2764Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2761.122 kb on - strand, within Psest_2580at 2761.122 kb on - strand, within Psest_2580at 2761.122 kb on - strand, within Psest_2580at 2761.544 kb on + strand, within Psest_2581at 2761.545 kb on - strand, within Psest_2581at 2761.564 kb on + strand, within Psest_2581at 2761.565 kb on - strand, within Psest_2581at 2761.565 kb on - strand, within Psest_2581at 2761.573 kb on + strand, within Psest_2581at 2764.305 kb on - strandat 2764.305 kb on - strandat 2764.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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2,761,122 - Psest_2580 0.63 -1.2
2,761,122 - Psest_2580 0.63 +1.5
2,761,122 - Psest_2580 0.63 -3.0
2,761,544 + Psest_2581 0.19 +1.9
2,761,545 - Psest_2581 0.19 -0.1
2,761,564 + Psest_2581 0.22 -2.8
2,761,565 - Psest_2581 0.23 -1.6
2,761,565 - Psest_2581 0.23 +0.2
2,761,573 + Psest_2581 0.24 -1.7
2,764,305 - +5.9
2,764,305 - +1.3
2,764,305 - +4.7

Or see this region's nucleotide sequence