Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2580 and Psest_2581 are separated by 98 nucleotides Psest_2581 and Psest_2582 overlap by 17 nucleotides Psest_2582 and Psest_2583 overlap by 4 nucleotides
Psest_2580: Psest_2580 - Uncharacterized membrane protein, required for colicin V production, at 2,760,778 to 2,761,323
_2580
Psest_2581: Psest_2581 - Uncharacterized protein conserved in bacteria, at 2,761,422 to 2,762,054
_2581
Psest_2582: Psest_2582 - folylpolyglutamate synthase/dihydrofolate synthase, at 2,762,038 to 2,763,342
_2582
Psest_2583: Psest_2583 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 2,763,339 to 2,764,232
_2583
Position (kb)
2762
2763
2764 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2761.122 kb on - strand, within Psest_2580 at 2761.122 kb on - strand, within Psest_2580 at 2761.122 kb on - strand, within Psest_2580 at 2761.544 kb on + strand, within Psest_2581 at 2761.545 kb on - strand, within Psest_2581 at 2761.564 kb on + strand, within Psest_2581 at 2761.565 kb on - strand, within Psest_2581 at 2761.565 kb on - strand, within Psest_2581 at 2761.573 kb on + strand, within Psest_2581 at 2764.305 kb on - strand at 2764.305 kb on - strand at 2764.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 2,761,122 - Psest_2580 0.63 -1.2 2,761,122 - Psest_2580 0.63 +1.5 2,761,122 - Psest_2580 0.63 -3.0 2,761,544 + Psest_2581 0.19 +1.9 2,761,545 - Psest_2581 0.19 -0.1 2,761,564 + Psest_2581 0.22 -2.8 2,761,565 - Psest_2581 0.23 -1.6 2,761,565 - Psest_2581 0.23 +0.2 2,761,573 + Psest_2581 0.24 -1.7 2,764,305 - +5.9 2,764,305 - +1.3 2,764,305 - +4.7
Or see this region's nucleotide sequence