Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2545 and Psest_2546 are separated by 101 nucleotides Psest_2546 and Psest_2547 are separated by 19 nucleotides Psest_2547 and Psest_2548 are separated by 87 nucleotides
Psest_2545: Psest_2545 - recombination protein RecR, at 2,724,555 to 2,725,154
_2545
Psest_2546: Psest_2546 - DNA-binding protein, YbaB/EbfC family, at 2,725,256 to 2,725,582
_2546
Psest_2547: Psest_2547 - DNA polymerase III, subunit gamma and tau, at 2,725,602 to 2,727,614
_2547
Psest_2548: Psest_2548 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,727,702 to 2,728,847
_2548
Position (kb)
2725
2726
2727
2728 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2724.694 kb on + strand, within Psest_2545 at 2724.694 kb on + strand, within Psest_2545 at 2724.695 kb on - strand, within Psest_2545 at 2724.789 kb on - strand, within Psest_2545 at 2724.848 kb on - strand, within Psest_2545 at 2724.848 kb on - strand, within Psest_2545 at 2725.096 kb on - strand at 2725.159 kb on - strand at 2725.250 kb on + strand at 2725.250 kb on + strand at 2725.257 kb on + strand at 2725.257 kb on + strand at 2725.258 kb on - strand at 2725.258 kb on - strand at 2725.258 kb on - strand at 2727.692 kb on + strand at 2727.692 kb on + strand at 2727.693 kb on - strand at 2727.693 kb on - strand at 2727.693 kb on - strand at 2727.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 2,724,694 + Psest_2545 0.23 +1.6 2,724,694 + Psest_2545 0.23 -0.9 2,724,695 - Psest_2545 0.23 +1.3 2,724,789 - Psest_2545 0.39 -0.5 2,724,848 - Psest_2545 0.49 -1.6 2,724,848 - Psest_2545 0.49 -1.9 2,725,096 - +0.7 2,725,159 - +0.6 2,725,250 + -0.9 2,725,250 + +0.1 2,725,257 + +0.3 2,725,257 + -2.1 2,725,258 - -0.3 2,725,258 - +0.1 2,725,258 - -2.0 2,727,692 + +0.4 2,727,692 + +2.3 2,727,693 - +0.0 2,727,693 - -1.7 2,727,693 - +0.6 2,727,693 - -0.8
Or see this region's nucleotide sequence