Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2024

Experiment: L-tyrosine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine (C)
2,143,599	+		Psest_2023	0.76	+2.8
2,143,600	-		Psest_2023	0.76	+2.7
2,143,663	-		Psest_2023	0.79	+3.2
2,143,746	+		Psest_2023	0.83	+2.7
2,144,045	+				+3.5
2,144,045	+				+4.4
2,144,100	+				+4.2
2,144,100	+				+1.1
2,144,127	+				+4.7
2,144,246	+				+0.8
2,144,314	-				+1.0
2,144,359	-				+3.5
2,144,361	-				+1.4
2,144,398	+				+2.2
2,144,399	-				+0.1
2,144,415	+				+2.6
2,144,415	+				+4.0
2,144,416	-				+0.2
2,144,416	-				-0.3
2,144,416	-				-1.7
2,144,416	-				+3.2
2,144,416	-				+1.2
2,144,582	+				-0.1
2,144,582	+				-2.9
2,144,582	+				-0.1
2,144,583	-				-0.0
2,144,583	-				-0.1
2,144,583	-				+1.0
2,144,583	-				-1.1
2,144,584	+				+1.0
2,144,584	+				-1.2
2,144,584	+				-0.7
2,144,584	+				-0.5
2,144,584	+				-3.3
2,144,585	-				+0.0
2,144,585	-				-1.7
2,144,585	-				-2.3
2,144,585	-				+1.0
2,144,585	-				-2.8
2,144,585	-				+1.7
2,144,585	-				+0.7
2,144,586	+				+0.1
2,144,586	+				-1.2
2,144,586	+				+0.4
2,144,586	+				+2.5
2,144,586	+				-1.1
2,144,586	+				+1.3
2,144,586	+				-1.0
2,144,586	+				-1.5
2,144,586	+				-0.9
2,144,586	+				-2.3
2,144,586	+				-1.7
2,144,586	+				-1.4
2,144,587	-				-0.2
2,144,587	-				-0.4
2,144,587	-				+0.6
2,144,587	-				+1.8
2,144,587	-				-1.2
2,144,587	-				+2.0
2,144,587	-				+0.8
2,144,587	-				-2.9
2,144,587	-				-1.3
2,144,587	-				-0.0
2,144,587	-				+1.6
2,144,661	-		Psest_2024	0.14	-0.7
2,144,774	+		Psest_2024	0.23	+2.8
2,144,774	+		Psest_2024	0.23	+2.0
2,144,775	-		Psest_2024	0.23	-2.6
2,144,775	-		Psest_2024	0.23	-2.7
2,144,775	-		Psest_2024	0.23	-0.6
2,144,864	+		Psest_2024	0.30	+0.7
2,144,864	+		Psest_2024	0.30	+1.3
2,144,865	-		Psest_2024	0.30	+0.4
2,144,865	-		Psest_2024	0.30	+0.8
2,144,865	-		Psest_2024	0.30	+0.9
2,144,969	+		Psest_2024	0.38	+0.8
2,144,970	-		Psest_2024	0.39	-0.9
2,144,970	-		Psest_2024	0.39	+0.8
2,144,970	-		Psest_2024	0.39	+1.3
2,144,980	-		Psest_2024	0.39	-0.7
2,145,158	-		Psest_2024	0.53	-0.6
2,145,170	-		Psest_2024	0.54	+0.5
2,145,227	+		Psest_2024	0.59	+1.1
2,145,313	+		Psest_2024	0.66	+2.8
2,145,413	+		Psest_2024	0.74	+0.8
2,145,413	+		Psest_2024	0.74	+0.2
2,145,413	+		Psest_2024	0.74	-0.1
2,145,414	-		Psest_2024	0.74	+1.5
2,145,414	-		Psest_2024	0.74	+1.9
2,145,538	+		Psest_2024	0.84	+0.7
2,145,538	+		Psest_2024	0.84	-0.2
2,145,538	+		Psest_2024	0.84	+2.2
2,145,538	+		Psest_2024	0.84	+1.1
2,145,538	+		Psest_2024	0.84	+1.1
2,145,539	-		Psest_2024	0.84	+1.3
2,145,539	-		Psest_2024	0.84	+0.2
2,145,539	-		Psest_2024	0.84	-3.1
2,145,600	+		Psest_2024	0.89	+0.0
2,145,601	-		Psest_2024	0.89	+0.1
2,145,662	+				-1.9
2,145,663	-				+0.0
2,145,736	+				+1.8
2,145,736	+				+0.9
2,145,736	+				+0.1
2,145,736	+				-1.3
2,145,736	+				-0.8
2,145,736	+				+0.7
2,145,736	+				-0.6
2,145,736	+				+0.5
2,145,737	-				-1.6
2,145,737	-				-1.4
2,145,737	-				+1.0
2,145,737	-				+2.7
2,145,737	-				-0.1
2,145,737	-				+0.8
2,145,740	+				+0.2
2,145,741	-				-1.6
2,146,008	+		Psest_2025	0.78	+1.8
2,146,059	+				+2.2
2,146,059	+				+2.5
2,146,060	-				-2.2
2,146,060	-				-0.1
2,146,101	+				+1.2
2,146,101	+				-0.4
2,146,101	+				+3.9
2,146,124	+				+2.3
2,146,167	+				+1.5
2,146,168	-				-0.6
2,146,175	+				+1.0
2,146,175	+				+1.0
2,146,176	-				-1.0
2,146,176	-				+0.4
2,146,184	+				+3.0
2,146,185	-				-2.4
2,146,241	-				-2.9
2,146,245	-				-1.3
2,146,245	-				-1.4
2,146,245	-				-0.5
2,146,245	-				-1.7
2,146,268	-				-1.7
2,146,308	+				+0.2
2,146,308	+				+2.0
2,146,308	+				+0.0
2,146,403	+		Psest_2026	0.33	+1.9
2,146,404	-		Psest_2026	0.33	+0.8
2,146,404	-		Psest_2026	0.33	+1.1
2,146,404	-		Psest_2026	0.33	+0.1
2,146,404	-		Psest_2026	0.33	-1.2
2,146,404	-		Psest_2026	0.33	-2.4
2,146,404	-		Psest_2026	0.33	-1.1
2,146,405	+		Psest_2026	0.34	+1.8
2,146,405	+		Psest_2026	0.34	+0.2
2,146,405	+		Psest_2026	0.34	-0.5
2,146,405	+		Psest_2026	0.34	+0.3
2,146,405	+		Psest_2026	0.34	+0.1
2,146,405	+		Psest_2026	0.34	+2.5
2,146,405	+		Psest_2026	0.34	+1.6
2,146,406	-		Psest_2026	0.34	+0.0
2,146,406	-		Psest_2026	0.34	+1.8
2,146,406	-		Psest_2026	0.34	-2.1
2,146,406	-		Psest_2026	0.34	-0.6
2,146,406	-		Psest_2026	0.34	-0.8
2,146,406	-		Psest_2026	0.34	+1.6
2,146,406	-		Psest_2026	0.34	+1.4
2,146,406	-		Psest_2026	0.34	-1.7
2,146,406	-		Psest_2026	0.34	-0.9
2,146,420	+		Psest_2026	0.38	+2.0
2,146,421	-		Psest_2026	0.38	-2.7
2,146,431	-		Psest_2026	0.41	-0.7
2,146,547	+		Psest_2026	0.73	+2.4
2,146,547	+		Psest_2026	0.73	+1.3
2,146,548	-		Psest_2026	0.73	+0.5
2,146,592	+		Psest_2026	0.85	+0.0
2,146,592	+		Psest_2026	0.85	+1.8
2,146,593	-		Psest_2026	0.85	+1.4
2,146,674	+				-1.6
2,146,674	+				-0.9
2,146,674	+				-3.6
2,146,675	-				-0.7
2,146,675	-				-0.3
2,146,675	-				-0.6
2,146,675	-				-0.2
2,146,675	-				-2.5
2,146,675	-				+0.7
2,146,728	+				+2.0
2,146,728	+				-1.8