Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0180 and Psest_0181 are separated by 212 nucleotides Psest_0181 and Psest_0182 are separated by 52 nucleotides Psest_0182 and Psest_0183 are separated by 59 nucleotides
Psest_0180: Psest_0180 - ABC-type Fe3+ transport system, permease component, at 173,534 to 175,150
_0180
Psest_0181: Psest_0181 - glycine cleavage system T protein, at 175,363 to 176,445
_0181
Psest_0182: Psest_0182 - glycine cleavage system H protein, at 176,498 to 176,887
_0182
Psest_0183: Psest_0183 - glycine dehydrogenase (decarboxylating), at 176,947 to 179,823
_0183
Position (kb) 175
176
177 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 175.266 kb on - strand at 175.313 kb on + strand at 175.374 kb on + strand at 175.374 kb on + strand at 175.375 kb on - strand at 175.384 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.464 kb on - strand at 175.555 kb on + strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.667 kb on - strand, within Psest_0181 at 175.667 kb on - strand, within Psest_0181 at 175.924 kb on + strand, within Psest_0181 at 176.307 kb on + strand, within Psest_0181 at 176.308 kb on - strand, within Psest_0181 at 176.308 kb on - strand, within Psest_0181 at 176.308 kb on - strand, within Psest_0181 at 176.308 kb on - strand, within Psest_0181 at 176.308 kb on - strand, within Psest_0181 at 176.435 kb on + strand at 176.435 kb on + strand at 176.436 kb on - strand at 176.436 kb on - strand at 176.443 kb on + strand at 176.443 kb on + strand at 176.444 kb on - strand at 176.444 kb on - strand at 176.622 kb on - strand, within Psest_0182 at 176.622 kb on - strand, within Psest_0182 at 176.708 kb on + strand, within Psest_0182 at 176.708 kb on + strand, within Psest_0182 at 176.708 kb on + strand, within Psest_0182 at 176.708 kb on + strand, within Psest_0182 at 176.708 kb on + strand, within Psest_0182 at 176.708 kb on + strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.709 kb on - strand, within Psest_0182 at 176.786 kb on + strand, within Psest_0182 at 176.940 kb on - strand at 176.940 kb on - strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.953 kb on + strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.954 kb on - strand at 176.955 kb on + strand at 176.955 kb on + strand at 176.955 kb on + strand at 176.955 kb on + strand at 176.955 kb on + strand at 177.278 kb on - strand, within Psest_0183 at 177.278 kb on - strand, within Psest_0183 at 177.286 kb on + strand, within Psest_0183 at 177.286 kb on + strand, within Psest_0183 at 177.286 kb on + strand, within Psest_0183 at 177.286 kb on + strand, within Psest_0183 at 177.287 kb on - strand, within Psest_0183 at 177.287 kb on - strand, within Psest_0183 at 177.341 kb on - strand, within Psest_0183 at 177.341 kb on - strand, within Psest_0183 at 177.341 kb on - strand, within Psest_0183 at 177.341 kb on - strand, within Psest_0183
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 175,266 - -0.7 175,313 + -2.6 175,374 + -1.4 175,374 + +0.8 175,375 - -1.8 175,384 + -0.4 175,463 + -3.3 175,463 + +1.2 175,463 + -1.9 175,463 + -2.7 175,464 - -1.1 175,555 + Psest_0181 0.18 -1.2 175,556 - Psest_0181 0.18 -3.3 175,556 - Psest_0181 0.18 -1.9 175,556 - Psest_0181 0.18 -3.6 175,556 - Psest_0181 0.18 -0.1 175,615 + Psest_0181 0.23 +1.7 175,615 + Psest_0181 0.23 +0.3 175,615 + Psest_0181 0.23 +1.3 175,667 - Psest_0181 0.28 -1.6 175,667 - Psest_0181 0.28 -3.5 175,924 + Psest_0181 0.52 -4.1 176,307 + Psest_0181 0.87 -1.6 176,308 - Psest_0181 0.87 -1.9 176,308 - Psest_0181 0.87 -1.1 176,308 - Psest_0181 0.87 +0.3 176,308 - Psest_0181 0.87 -0.8 176,308 - Psest_0181 0.87 -1.8 176,435 + -1.4 176,435 + -0.4 176,436 - +1.7 176,436 - +2.0 176,443 + +0.7 176,443 + -0.4 176,444 - +1.5 176,444 - +0.9 176,622 - Psest_0182 0.32 +3.0 176,622 - Psest_0182 0.32 +0.6 176,708 + Psest_0182 0.54 +1.5 176,708 + Psest_0182 0.54 +3.6 176,708 + Psest_0182 0.54 +2.9 176,708 + Psest_0182 0.54 -0.7 176,708 + Psest_0182 0.54 -1.0 176,708 + Psest_0182 0.54 +2.0 176,709 - Psest_0182 0.54 +1.8 176,709 - Psest_0182 0.54 +2.5 176,709 - Psest_0182 0.54 +1.9 176,709 - Psest_0182 0.54 +1.2 176,709 - Psest_0182 0.54 +2.5 176,709 - Psest_0182 0.54 +1.2 176,709 - Psest_0182 0.54 +1.5 176,709 - Psest_0182 0.54 +0.9 176,709 - Psest_0182 0.54 +1.9 176,786 + Psest_0182 0.74 +1.1 176,940 - +2.1 176,940 - +1.4 176,953 + -2.7 176,953 + +2.6 176,953 + +1.5 176,953 + -0.3 176,953 + -0.8 176,953 + +0.8 176,953 + +0.8 176,953 + +1.8 176,954 - +2.6 176,954 - +1.6 176,954 - +0.6 176,954 - -0.8 176,954 - -1.4 176,954 - -2.1 176,954 - -1.3 176,954 - -0.8 176,955 + -1.6 176,955 + +0.4 176,955 + +1.6 176,955 + +0.8 176,955 + -1.2 177,278 - Psest_0183 0.12 +2.3 177,278 - Psest_0183 0.12 +2.8 177,286 + Psest_0183 0.12 -1.0 177,286 + Psest_0183 0.12 +0.2 177,286 + Psest_0183 0.12 -0.9 177,286 + Psest_0183 0.12 -0.6 177,287 - Psest_0183 0.12 -0.9 177,287 - Psest_0183 0.12 -1.5 177,341 - Psest_0183 0.14 +0.8 177,341 - Psest_0183 0.14 +1.4 177,341 - Psest_0183 0.14 +2.0 177,341 - Psest_0183 0.14 -1.1
Or see this region's nucleotide sequence