Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0010 and Psest_0011 overlap by 4 nucleotides Psest_0011 and Psest_0012 are separated by 107 nucleotides Psest_0012 and Psest_0013 are separated by 108 nucleotides
Psest_0010: Psest_0010 - glycyl-tRNA synthetase, tetrameric type, beta subunit, at 11,356 to 13,410
_0010
Psest_0011: Psest_0011 - glycyl-tRNA synthetase, tetrameric type, alpha subunit, at 13,407 to 14,354
_0011
Psest_0012: Psest_0012 - DNA-3-methyladenine glycosylase I, at 14,462 to 15,019
_0012
Psest_0013: Psest_0013 - Lauroyl/myristoyl acyltransferase, at 15,128 to 16,015
_0013
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.395 kb on - strand at 14.395 kb on - strand at 14.395 kb on - strand at 14.498 kb on + strand at 14.498 kb on + strand at 14.498 kb on + strand at 14.498 kb on + strand at 14.498 kb on + strand at 14.499 kb on - strand at 14.499 kb on - strand at 14.936 kb on + strand, within Psest_0012 at 14.936 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.942 kb on + strand, within Psest_0012 at 14.943 kb on - strand, within Psest_0012 at 14.943 kb on - strand, within Psest_0012 at 14.943 kb on - strand, within Psest_0012 at 14.943 kb on - strand, within Psest_0012 at 14.943 kb on - strand, within Psest_0012 at 14.943 kb on - strand, within Psest_0012 at 14.994 kb on - strand at 15.033 kb on + strand at 15.033 kb on + strand at 15.033 kb on + strand at 15.034 kb on - strand at 15.094 kb on + strand at 15.094 kb on + strand at 15.094 kb on + strand at 15.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 14,395 - +3.3 14,395 - +2.2 14,395 - +2.0 14,498 + -1.7 14,498 + +1.2 14,498 + -0.4 14,498 + -1.1 14,498 + -0.1 14,499 - -1.2 14,499 - +1.4 14,936 + Psest_0012 0.85 -1.2 14,936 + Psest_0012 0.85 -1.3 14,942 + Psest_0012 0.86 -0.1 14,942 + Psest_0012 0.86 -0.6 14,942 + Psest_0012 0.86 +0.5 14,942 + Psest_0012 0.86 +2.9 14,942 + Psest_0012 0.86 -1.3 14,942 + Psest_0012 0.86 +0.3 14,942 + Psest_0012 0.86 +0.3 14,942 + Psest_0012 0.86 -1.9 14,942 + Psest_0012 0.86 +1.7 14,942 + Psest_0012 0.86 -0.4 14,942 + Psest_0012 0.86 +1.9 14,942 + Psest_0012 0.86 -0.4 14,943 - Psest_0012 0.86 +0.2 14,943 - Psest_0012 0.86 +0.3 14,943 - Psest_0012 0.86 +0.4 14,943 - Psest_0012 0.86 -2.0 14,943 - Psest_0012 0.86 +1.3 14,943 - Psest_0012 0.86 -0.4 14,994 - -1.3 15,033 + -0.3 15,033 + -0.3 15,033 + -0.8 15,034 - -1.0 15,094 + +0.6 15,094 + -0.2 15,094 + +1.8 15,095 - -2.0
Or see this region's nucleotide sequence