Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3667

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3666 and Psest_3667 are separated by 110 nucleotidesPsest_3667 and Psest_3668 are separated by 114 nucleotidesPsest_3668 and Psest_3669 are separated by 33 nucleotides Psest_3666: Psest_3666 - Parvulin-like peptidyl-prolyl isomerase, at 3,830,086 to 3,831,399 _3666 Psest_3667: Psest_3667 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,831,510 to 3,832,502 _3667 Psest_3668: Psest_3668 - dimethyladenosine transferase, at 3,832,617 to 3,833,411 _3668 Psest_3669: Psest_3669 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 3,833,445 to 3,833,828 _3669 Position (kb) 3831 3832 3833Strain fitness (log2 ratio) -2 -1 0 1at 3831.397 kb on + strandat 3831.398 kb on - strandat 3831.398 kb on - strandat 3831.408 kb on + strandat 3831.408 kb on + strandat 3831.408 kb on + strandat 3831.408 kb on + strandat 3831.409 kb on - strandat 3831.409 kb on - strandat 3831.409 kb on - strandat 3831.417 kb on + strandat 3831.417 kb on + strandat 3831.417 kb on + strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.422 kb on + strandat 3832.551 kb on - strandat 3832.551 kb on - strandat 3832.555 kb on + strandat 3832.950 kb on + strand, within Psest_3668at 3833.405 kb on + strandat 3833.405 kb on + strandat 3833.405 kb on + strandat 3833.406 kb on - strandat 3833.406 kb on - strandat 3833.406 kb on - strandat 3833.410 kb on - strandat 3833.456 kb on + strandat 3833.456 kb on + strandat 3833.457 kb on - strandat 3833.457 kb on - strandat 3833.463 kb on + strandat 3833.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,831,397 + +0.2
3,831,398 - +0.8
3,831,398 - +0.1
3,831,408 + -2.6
3,831,408 + -0.3
3,831,408 + -2.6
3,831,408 + -2.4
3,831,409 - -0.7
3,831,409 - +0.3
3,831,409 - +0.1
3,831,417 + -0.4
3,831,417 + +0.4
3,831,417 + -0.1
3,831,418 - +0.3
3,831,418 - +0.1
3,831,418 - -0.3
3,831,418 - +1.0
3,831,418 - -0.6
3,831,418 - +0.2
3,831,418 - -0.6
3,831,418 - +0.9
3,831,418 - -1.1
3,831,418 - -0.7
3,831,418 - +1.0
3,831,422 + -0.4
3,832,551 - +0.1
3,832,551 - +1.0
3,832,555 + +1.0
3,832,950 + Psest_3668 0.42 +0.6
3,833,405 + -0.9
3,833,405 + -0.3
3,833,405 + -0.8
3,833,406 - -1.6
3,833,406 - +0.5
3,833,406 - -0.3
3,833,410 - -0.2
3,833,456 + -0.2
3,833,456 + +0.7
3,833,457 - -0.9
3,833,457 - +0.2
3,833,463 + -0.2
3,833,463 + +0.8

Or see this region's nucleotide sequence