Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0297 and Psest_0298 are separated by 43 nucleotides Psest_0298 and Psest_0299 are separated by 41 nucleotides Psest_0299 and Psest_0300 are separated by 76 nucleotides
Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736
_0297
Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145
_0298
Psest_0299: Psest_0299 - Chemotaxis signal transduction protein, at 312,187 to 312,723
_0299
Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848
_0300
Position (kb) 312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 311.206 kb on + strand at 311.229 kb on + strand at 311.229 kb on + strand at 311.230 kb on - strand at 311.288 kb on + strand at 311.289 kb on - strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.300 kb on - strand at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.418 kb on - strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.506 kb on - strand, within Psest_0297 at 311.506 kb on - strand, within Psest_0297 at 311.629 kb on - strand, within Psest_0297 at 311.629 kb on - strand, within Psest_0297 at 311.768 kb on + strand at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.926 kb on - strand, within Psest_0298 at 312.080 kb on + strand, within Psest_0298 at 312.081 kb on - strand, within Psest_0298 at 312.232 kb on - strand at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.630 kb on + strand, within Psest_0299 at 312.631 kb on - strand, within Psest_0299 at 312.631 kb on - strand, within Psest_0299 at 312.707 kb on + strand at 312.708 kb on - strand at 312.722 kb on - strand at 312.722 kb on - strand at 312.722 kb on - strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.727 kb on + strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.728 kb on - strand at 312.810 kb on + strand at 312.810 kb on + strand at 312.810 kb on + strand at 312.810 kb on + strand at 312.811 kb on - strand at 312.817 kb on + strand at 312.817 kb on + strand at 312.817 kb on + strand at 312.818 kb on - strand at 312.825 kb on + strand at 312.891 kb on + strand at 312.891 kb on + strand at 312.892 kb on - strand at 312.892 kb on - strand at 312.914 kb on + strand at 312.915 kb on - strand at 312.923 kb on - strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.947 kb on + strand at 312.948 kb on - strand at 312.948 kb on - strand at 312.948 kb on - strand at 312.948 kb on - strand at 312.975 kb on + strand at 312.976 kb on - strand at 312.976 kb on - strand at 313.083 kb on - strand, within Psest_0300 at 313.186 kb on + strand, within Psest_0300 at 313.218 kb on + strand, within Psest_0300 at 313.218 kb on + strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.219 kb on - strand, within Psest_0300 at 313.243 kb on + strand, within Psest_0300 at 313.244 kb on - strand, within Psest_0300 at 313.244 kb on - strand, within Psest_0300 at 313.369 kb on + strand, within Psest_0300 at 313.369 kb on + strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.370 kb on - strand, within Psest_0300 at 313.383 kb on + strand, within Psest_0300 at 313.429 kb on + strand, within Psest_0300 at 313.430 kb on - strand, within Psest_0300 at 313.465 kb on - strand, within Psest_0300 at 313.569 kb on + strand, within Psest_0300 at 313.570 kb on - strand, within Psest_0300 at 313.570 kb on - strand, within Psest_0300 at 313.639 kb on + strand, within Psest_0300 at 313.639 kb on + strand, within Psest_0300 at 313.639 kb on + strand, within Psest_0300 at 313.640 kb on - strand, within Psest_0300 at 313.640 kb on - strand, within Psest_0300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 311,206 + +0.6 311,229 + +0.3 311,229 + -0.8 311,230 - -0.0 311,288 + +1.3 311,289 - -1.1 311,299 + +0.5 311,299 + -0.2 311,299 + -0.4 311,299 + +0.4 311,300 - -0.8 311,417 + Psest_0297 0.22 -0.2 311,417 + Psest_0297 0.22 -2.8 311,417 + Psest_0297 0.22 -0.7 311,417 + Psest_0297 0.22 +0.9 311,417 + Psest_0297 0.22 +0.8 311,418 - Psest_0297 0.22 +0.2 311,505 + Psest_0297 0.43 +0.1 311,505 + Psest_0297 0.43 -0.5 311,505 + Psest_0297 0.43 -0.3 311,505 + Psest_0297 0.43 -2.0 311,506 - Psest_0297 0.43 -1.4 311,506 - Psest_0297 0.43 -0.5 311,629 - Psest_0297 0.74 -1.1 311,629 - Psest_0297 0.74 -0.9 311,768 + +0.7 311,822 + Psest_0298 0.11 -0.4 311,822 + Psest_0298 0.11 -0.3 311,822 + Psest_0298 0.11 +1.2 311,822 + Psest_0298 0.11 -0.3 311,822 + Psest_0298 0.11 -0.9 311,822 + Psest_0298 0.11 -0.7 311,822 + Psest_0298 0.11 -1.2 311,822 + Psest_0298 0.11 -0.6 311,823 - Psest_0298 0.12 -0.8 311,823 - Psest_0298 0.12 -0.8 311,823 - Psest_0298 0.12 -0.3 311,823 - Psest_0298 0.12 -0.2 311,926 - Psest_0298 0.40 -0.8 312,080 + Psest_0298 0.82 -1.0 312,081 - Psest_0298 0.82 -2.1 312,232 - -1.5 312,630 + Psest_0299 0.82 +0.2 312,630 + Psest_0299 0.82 -0.1 312,630 + Psest_0299 0.82 +0.6 312,630 + Psest_0299 0.82 +0.9 312,630 + Psest_0299 0.82 +0.6 312,630 + Psest_0299 0.82 +2.0 312,630 + Psest_0299 0.82 -0.0 312,630 + Psest_0299 0.82 +1.0 312,630 + Psest_0299 0.82 +0.2 312,631 - Psest_0299 0.83 -0.9 312,631 - Psest_0299 0.83 -0.5 312,707 + +0.5 312,708 - -2.0 312,722 - -0.5 312,722 - -0.7 312,722 - -0.1 312,727 + +0.3 312,727 + +0.1 312,727 + +0.5 312,727 + -0.1 312,727 + -0.4 312,727 + -0.4 312,728 - -1.0 312,728 - +0.0 312,728 - -0.1 312,728 - -0.4 312,728 - -0.3 312,728 - -0.9 312,728 - +0.1 312,728 - -2.5 312,810 + -0.7 312,810 + -1.6 312,810 + +0.3 312,810 + +0.1 312,811 - -1.1 312,817 + -0.7 312,817 + -0.1 312,817 + -0.4 312,818 - +0.1 312,825 + -0.2 312,891 + -0.5 312,891 + -0.5 312,892 - -0.7 312,892 - -0.7 312,914 + +0.2 312,915 - -0.7 312,923 - -0.1 312,947 + -1.7 312,947 + +0.4 312,947 + -0.6 312,947 + -0.7 312,947 + -0.4 312,947 + -0.4 312,948 - -0.3 312,948 - -0.0 312,948 - -0.7 312,948 - -1.5 312,975 + +0.5 312,976 - -1.3 312,976 - -1.7 313,083 - Psest_0300 0.14 -0.7 313,186 + Psest_0300 0.19 +0.0 313,218 + Psest_0300 0.20 -0.9 313,218 + Psest_0300 0.20 +0.0 313,219 - Psest_0300 0.20 -1.9 313,219 - Psest_0300 0.20 -1.8 313,219 - Psest_0300 0.20 -1.2 313,219 - Psest_0300 0.20 -2.6 313,243 + Psest_0300 0.22 +0.4 313,244 - Psest_0300 0.22 -0.2 313,244 - Psest_0300 0.22 +0.1 313,369 + Psest_0300 0.28 -2.5 313,369 + Psest_0300 0.28 -2.0 313,370 - Psest_0300 0.28 -0.8 313,370 - Psest_0300 0.28 -0.0 313,370 - Psest_0300 0.28 -0.1 313,370 - Psest_0300 0.28 -0.1 313,383 + Psest_0300 0.28 -0.9 313,429 + Psest_0300 0.31 -0.6 313,430 - Psest_0300 0.31 -1.2 313,465 - Psest_0300 0.32 -0.3 313,569 + Psest_0300 0.38 -1.4 313,570 - Psest_0300 0.38 -0.3 313,570 - Psest_0300 0.38 -0.4 313,639 + Psest_0300 0.41 -0.3 313,639 + Psest_0300 0.41 -0.8 313,639 + Psest_0300 0.41 -0.8 313,640 - Psest_0300 0.41 -0.7 313,640 - Psest_0300 0.41 -0.9
Or see this region's nucleotide sequence