Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0740

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0738 and Psest_0739 are separated by 148 nucleotidesPsest_0739 and Psest_0740 are separated by 4 nucleotidesPsest_0740 and Psest_0741 are separated by 86 nucleotides Psest_0738: Psest_0738 - copper-(or silver)-translocating P-type ATPase, at 810,712 to 813,090 _0738 Psest_0739: Psest_0739 - Copper chaperone, at 813,239 to 813,430 _0739 Psest_0740: Psest_0740 - Transcriptional regulator, at 813,435 to 814,199 _0740 Psest_0741: Psest_0741 - drug resistance transporter, Bcr/CflA subfamily, at 814,286 to 815,458 _0741 Position (kb) 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1at 812.483 kb on + strand, within Psest_0738at 812.483 kb on + strand, within Psest_0738at 812.483 kb on + strand, within Psest_0738at 812.484 kb on - strand, within Psest_0738at 812.484 kb on - strand, within Psest_0738at 812.484 kb on - strand, within Psest_0738at 812.509 kb on + strand, within Psest_0738at 812.509 kb on + strand, within Psest_0738at 812.509 kb on + strand, within Psest_0738at 812.510 kb on - strand, within Psest_0738at 812.696 kb on + strand, within Psest_0738at 812.890 kb on + strandat 812.891 kb on - strandat 812.956 kb on - strandat 813.072 kb on + strandat 813.247 kb on - strandat 813.247 kb on - strandat 813.247 kb on - strandat 813.940 kb on + strand, within Psest_0740at 813.940 kb on + strand, within Psest_0740at 813.941 kb on - strand, within Psest_0740at 813.941 kb on - strand, within Psest_0740at 814.145 kb on - strandat 814.173 kb on + strandat 814.174 kb on - strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.187 kb on + strandat 814.188 kb on - strandat 814.188 kb on - strandat 814.188 kb on - strandat 814.188 kb on - strandat 814.188 kb on - strandat 814.192 kb on - strandat 814.192 kb on - strandat 814.192 kb on - strandat 814.192 kb on - strandat 814.308 kb on + strandat 814.309 kb on - strandat 814.309 kb on - strandat 814.309 kb on - strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.352 kb on + strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.353 kb on - strandat 814.427 kb on + strand, within Psest_0741at 814.427 kb on + strand, within Psest_0741at 814.428 kb on - strand, within Psest_0741at 814.428 kb on - strand, within Psest_0741at 814.460 kb on + strand, within Psest_0741at 814.832 kb on + strand, within Psest_0741at 814.833 kb on - strand, within Psest_0741at 814.880 kb on + strand, within Psest_0741at 814.881 kb on - strand, within Psest_0741at 814.948 kb on + strand, within Psest_0741at 814.958 kb on + strand, within Psest_0741at 814.958 kb on + strand, within Psest_0741at 814.959 kb on - strand, within Psest_0741at 814.959 kb on - strand, within Psest_0741at 814.959 kb on - strand, within Psest_0741at 814.994 kb on + strand, within Psest_0741at 814.994 kb on + strand, within Psest_0741

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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812,483 + Psest_0738 0.74 +1.1
812,483 + Psest_0738 0.74 -0.1
812,483 + Psest_0738 0.74 -0.1
812,484 - Psest_0738 0.74 +0.8
812,484 - Psest_0738 0.74 -0.2
812,484 - Psest_0738 0.74 -0.4
812,509 + Psest_0738 0.76 +1.2
812,509 + Psest_0738 0.76 -0.4
812,509 + Psest_0738 0.76 -1.1
812,510 - Psest_0738 0.76 +0.4
812,696 + Psest_0738 0.83 -1.2
812,890 + +0.3
812,891 - -0.0
812,956 - +0.2
813,072 + -3.1
813,247 - -0.2
813,247 - -0.1
813,247 - -0.1
813,940 + Psest_0740 0.66 -0.6
813,940 + Psest_0740 0.66 -0.8
813,941 - Psest_0740 0.66 -0.3
813,941 - Psest_0740 0.66 -2.4
814,145 - -0.0
814,173 + +0.1
814,174 - -0.1
814,187 + +0.2
814,187 + -0.7
814,187 + +1.4
814,187 + -1.1
814,187 + +0.0
814,187 + +0.3
814,187 + +0.3
814,187 + -0.2
814,187 + -0.4
814,187 + -0.3
814,187 + -1.1
814,187 + +0.5
814,187 + -0.5
814,187 + +0.1
814,188 - +0.5
814,188 - +0.7
814,188 - +0.8
814,188 - -0.1
814,188 - -0.2
814,192 - +1.4
814,192 - -0.9
814,192 - +0.2
814,192 - +0.9
814,308 + -0.4
814,309 - +0.1
814,309 - +0.1
814,309 - +0.5
814,352 + +0.7
814,352 + -0.5
814,352 + +0.0
814,352 + -1.5
814,352 + +0.3
814,352 + +0.5
814,352 + +0.4
814,352 + +0.2
814,352 + +0.4
814,352 + -1.6
814,352 + -0.1
814,352 + -1.1
814,352 + -0.8
814,352 + +0.7
814,352 + +0.5
814,352 + -1.3
814,353 - -0.7
814,353 - +1.0
814,353 - +0.5
814,353 - +0.3
814,353 - +0.1
814,353 - +0.2
814,353 - +0.6
814,353 - +1.0
814,353 - -1.0
814,353 - -0.3
814,353 - -1.3
814,353 - +1.1
814,353 - -0.9
814,353 - -0.7
814,353 - +0.3
814,353 - -0.2
814,353 - +0.4
814,353 - +0.0
814,353 - -1.9
814,353 - +0.6
814,353 - +0.1
814,427 + Psest_0741 0.12 -0.4
814,427 + Psest_0741 0.12 +0.9
814,428 - Psest_0741 0.12 -0.0
814,428 - Psest_0741 0.12 +0.1
814,460 + Psest_0741 0.15 +0.5
814,832 + Psest_0741 0.47 -0.1
814,833 - Psest_0741 0.47 -0.9
814,880 + Psest_0741 0.51 +0.7
814,881 - Psest_0741 0.51 -0.2
814,948 + Psest_0741 0.56 +0.7
814,958 + Psest_0741 0.57 +0.7
814,958 + Psest_0741 0.57 +1.6
814,959 - Psest_0741 0.57 +0.0
814,959 - Psest_0741 0.57 +0.9
814,959 - Psest_0741 0.57 -0.7
814,994 + Psest_0741 0.60 -0.9
814,994 + Psest_0741 0.60 +1.2

Or see this region's nucleotide sequence