Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4276

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4275 and Psest_4276 overlap by 1 nucleotidesPsest_4276 and Psest_4277 overlap by 4 nucleotidesPsest_4277 and Psest_4278 overlap by 4 nucleotides Psest_4275: Psest_4275 - Outer membrane receptor for ferrienterochelin and colicins, at 4,465,207 to 4,467,270 _4275 Psest_4276: Psest_4276 - hypothetical protein, at 4,467,270 to 4,468,262 _4276 Psest_4277: Psest_4277 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 4,468,259 to 4,469,050 _4277 Psest_4278: Psest_4278 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 4,469,047 to 4,469,871 _4278 Position (kb) 4467 4468 4469Strain fitness (log2 ratio) -2 -1 0 1at 4466.279 kb on - strand, within Psest_4275at 4466.279 kb on - strand, within Psest_4275at 4466.279 kb on - strand, within Psest_4275at 4466.351 kb on - strand, within Psest_4275at 4466.464 kb on - strand, within Psest_4275at 4466.464 kb on - strand, within Psest_4275at 4466.464 kb on - strand, within Psest_4275at 4466.464 kb on - strand, within Psest_4275at 4466.623 kb on + strand, within Psest_4275at 4466.746 kb on + strand, within Psest_4275at 4466.746 kb on + strand, within Psest_4275at 4466.746 kb on + strand, within Psest_4275at 4466.747 kb on - strand, within Psest_4275at 4466.747 kb on - strand, within Psest_4275at 4466.830 kb on + strand, within Psest_4275at 4466.830 kb on + strand, within Psest_4275at 4466.830 kb on + strand, within Psest_4275at 4466.830 kb on + strand, within Psest_4275at 4466.831 kb on - strand, within Psest_4275at 4466.831 kb on - strand, within Psest_4275at 4467.146 kb on + strandat 4467.146 kb on + strandat 4467.146 kb on + strandat 4467.147 kb on - strandat 4467.147 kb on - strandat 4467.147 kb on - strandat 4467.182 kb on - strandat 4467.283 kb on + strandat 4467.283 kb on + strandat 4467.283 kb on + strandat 4467.283 kb on + strandat 4467.283 kb on + strandat 4467.284 kb on - strandat 4467.284 kb on - strandat 4467.284 kb on - strandat 4467.284 kb on - strandat 4467.284 kb on - strandat 4467.531 kb on + strand, within Psest_4276at 4467.532 kb on - strand, within Psest_4276at 4467.532 kb on - strand, within Psest_4276at 4467.739 kb on - strand, within Psest_4276at 4467.769 kb on + strand, within Psest_4276at 4467.769 kb on + strand, within Psest_4276at 4468.009 kb on - strand, within Psest_4276at 4468.009 kb on - strand, within Psest_4276at 4468.009 kb on - strand, within Psest_4276at 4468.236 kb on + strandat 4468.236 kb on + strandat 4468.236 kb on + strandat 4468.236 kb on + strandat 4468.236 kb on + strandat 4468.237 kb on - strandat 4468.237 kb on - strandat 4468.374 kb on - strand, within Psest_4277at 4468.394 kb on - strand, within Psest_4277at 4468.492 kb on + strand, within Psest_4277at 4468.492 kb on + strand, within Psest_4277at 4468.492 kb on + strand, within Psest_4277at 4468.492 kb on + strand, within Psest_4277at 4468.492 kb on + strand, within Psest_4277at 4468.493 kb on - strand, within Psest_4277at 4468.493 kb on - strand, within Psest_4277at 4468.493 kb on - strand, within Psest_4277at 4468.493 kb on - strand, within Psest_4277at 4468.790 kb on + strand, within Psest_4277at 4468.791 kb on - strand, within Psest_4277at 4468.791 kb on - strand, within Psest_4277at 4468.791 kb on - strand, within Psest_4277at 4468.791 kb on - strand, within Psest_4277at 4468.791 kb on - strand, within Psest_4277at 4468.791 kb on - strand, within Psest_4277at 4468.811 kb on + strand, within Psest_4277at 4468.811 kb on + strand, within Psest_4277at 4468.812 kb on - strand, within Psest_4277at 4468.991 kb on + strandat 4468.991 kb on + strandat 4468.991 kb on + strandat 4468.992 kb on - strandat 4468.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,466,279 - Psest_4275 0.52 -0.9
4,466,279 - Psest_4275 0.52 +1.3
4,466,279 - Psest_4275 0.52 +0.3
4,466,351 - Psest_4275 0.55 -0.9
4,466,464 - Psest_4275 0.61 +0.5
4,466,464 - Psest_4275 0.61 +1.3
4,466,464 - Psest_4275 0.61 -0.6
4,466,464 - Psest_4275 0.61 -1.3
4,466,623 + Psest_4275 0.69 -0.6
4,466,746 + Psest_4275 0.75 -1.6
4,466,746 + Psest_4275 0.75 +0.4
4,466,746 + Psest_4275 0.75 +0.3
4,466,747 - Psest_4275 0.75 +0.7
4,466,747 - Psest_4275 0.75 +0.2
4,466,830 + Psest_4275 0.79 -1.1
4,466,830 + Psest_4275 0.79 +1.1
4,466,830 + Psest_4275 0.79 +1.1
4,466,830 + Psest_4275 0.79 -1.0
4,466,831 - Psest_4275 0.79 +0.9
4,466,831 - Psest_4275 0.79 +0.7
4,467,146 + -0.4
4,467,146 + +0.0
4,467,146 + -0.4
4,467,147 - +0.4
4,467,147 - +0.1
4,467,147 - +1.4
4,467,182 - -0.2
4,467,283 + -1.0
4,467,283 + +0.3
4,467,283 + -0.5
4,467,283 + +0.2
4,467,283 + +0.3
4,467,284 - -0.0
4,467,284 - -2.1
4,467,284 - -0.5
4,467,284 - +0.2
4,467,284 - -0.3
4,467,531 + Psest_4276 0.26 -0.5
4,467,532 - Psest_4276 0.26 -0.4
4,467,532 - Psest_4276 0.26 -0.8
4,467,739 - Psest_4276 0.47 -1.5
4,467,769 + Psest_4276 0.50 -1.5
4,467,769 + Psest_4276 0.50 +0.3
4,468,009 - Psest_4276 0.74 -1.9
4,468,009 - Psest_4276 0.74 +1.0
4,468,009 - Psest_4276 0.74 -2.6
4,468,236 + -1.7
4,468,236 + -0.3
4,468,236 + -1.2
4,468,236 + +0.0
4,468,236 + -1.2
4,468,237 - +1.1
4,468,237 - +1.1
4,468,374 - Psest_4277 0.15 +0.9
4,468,394 - Psest_4277 0.17 -1.0
4,468,492 + Psest_4277 0.29 +0.4
4,468,492 + Psest_4277 0.29 -0.1
4,468,492 + Psest_4277 0.29 +0.7
4,468,492 + Psest_4277 0.29 -0.5
4,468,492 + Psest_4277 0.29 +0.1
4,468,493 - Psest_4277 0.30 -0.3
4,468,493 - Psest_4277 0.30 +0.8
4,468,493 - Psest_4277 0.30 -0.5
4,468,493 - Psest_4277 0.30 +1.5
4,468,790 + Psest_4277 0.67 +0.2
4,468,791 - Psest_4277 0.67 +0.4
4,468,791 - Psest_4277 0.67 -0.5
4,468,791 - Psest_4277 0.67 -1.6
4,468,791 - Psest_4277 0.67 -0.1
4,468,791 - Psest_4277 0.67 -1.2
4,468,791 - Psest_4277 0.67 +0.7
4,468,811 + Psest_4277 0.70 +0.2
4,468,811 + Psest_4277 0.70 -1.6
4,468,812 - Psest_4277 0.70 +0.0
4,468,991 + +0.6
4,468,991 + -1.7
4,468,991 + +0.1
4,468,992 - -0.5
4,468,992 - -0.1

Or see this region's nucleotide sequence