Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1528

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1527 and Psest_1528 are separated by 270 nucleotidesPsest_1528 and Psest_1529 are separated by 157 nucleotidesPsest_1529 and Psest_1530 overlap by 4 nucleotides Psest_1527: Psest_1527 - Na+/proline symporter, at 1,627,138 to 1,630,605 _1527 Psest_1528: Psest_1528 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,630,876 to 1,631,436 _1528 Psest_1529: Psest_1529 - Predicted branched-chain amino acid permease (azaleucine resistance), at 1,631,594 to 1,632,310 _1529 Psest_1530: Psest_1530 - Predicted membrane protein, at 1,632,307 to 1,632,633 _1530 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1629.956 kb on + strand, within Psest_1527at 1630.214 kb on + strand, within Psest_1527at 1630.214 kb on + strand, within Psest_1527at 1630.214 kb on + strand, within Psest_1527at 1630.214 kb on + strand, within Psest_1527at 1630.214 kb on + strand, within Psest_1527at 1630.214 kb on + strand, within Psest_1527at 1630.215 kb on - strand, within Psest_1527at 1630.215 kb on - strand, within Psest_1527at 1630.215 kb on - strand, within Psest_1527at 1630.261 kb on + strandat 1630.388 kb on + strandat 1630.388 kb on + strandat 1630.388 kb on + strandat 1630.389 kb on - strandat 1630.389 kb on - strandat 1630.389 kb on - strandat 1630.389 kb on - strandat 1630.389 kb on - strandat 1630.460 kb on + strandat 1630.460 kb on + strandat 1630.460 kb on + strandat 1630.482 kb on - strandat 1630.532 kb on + strandat 1630.532 kb on + strandat 1630.533 kb on - strandat 1630.560 kb on + strandat 1630.560 kb on + strandat 1630.560 kb on + strandat 1630.560 kb on + strandat 1630.561 kb on - strandat 1630.561 kb on - strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.562 kb on + strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.563 kb on - strandat 1630.661 kb on + strandat 1630.694 kb on + strandat 1630.694 kb on + strandat 1630.694 kb on + strandat 1630.694 kb on + strandat 1630.694 kb on + strandat 1630.694 kb on + strandat 1630.694 kb on + strandat 1630.695 kb on - strandat 1630.695 kb on - strandat 1630.695 kb on - strandat 1630.695 kb on - strandat 1630.696 kb on + strandat 1630.769 kb on + strandat 1630.770 kb on - strandat 1631.128 kb on - strand, within Psest_1528at 1631.128 kb on - strand, within Psest_1528at 1631.259 kb on + strand, within Psest_1528at 1631.260 kb on - strand, within Psest_1528at 1631.260 kb on - strand, within Psest_1528at 1631.260 kb on - strand, within Psest_1528at 1631.327 kb on + strand, within Psest_1528at 1631.327 kb on + strand, within Psest_1528at 1631.328 kb on - strand, within Psest_1528at 1631.455 kb on + strandat 1631.469 kb on + strandat 1631.469 kb on + strandat 1631.470 kb on - strandat 1631.470 kb on - strandat 1631.470 kb on - strandat 1631.542 kb on + strandat 1631.542 kb on + strandat 1631.542 kb on + strandat 1631.542 kb on + strandat 1631.580 kb on + strandat 1631.580 kb on + strandat 1631.580 kb on + strandat 1631.581 kb on - strandat 1631.581 kb on - strandat 1631.581 kb on - strandat 1631.581 kb on - strandat 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.848 kb on + strand, within Psest_1529at 1631.975 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.210 kb on - strand, within Psest_1529at 1632.210 kb on - strand, within Psest_1529at 1632.306 kb on + strandat 1632.307 kb on - strandat 1632.312 kb on + strandat 1632.325 kb on - strandat 1632.325 kb on - strandat 1632.361 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,629,956 + Psest_1527 0.81 -0.8
1,630,214 + Psest_1527 0.89 -0.6
1,630,214 + Psest_1527 0.89 -1.1
1,630,214 + Psest_1527 0.89 +0.2
1,630,214 + Psest_1527 0.89 -0.1
1,630,214 + Psest_1527 0.89 -0.7
1,630,214 + Psest_1527 0.89 +0.1
1,630,215 - Psest_1527 0.89 -1.1
1,630,215 - Psest_1527 0.89 +0.0
1,630,215 - Psest_1527 0.89 -0.6
1,630,261 + -0.5
1,630,388 + +0.0
1,630,388 + -0.5
1,630,388 + -0.5
1,630,389 - -1.3
1,630,389 - -0.3
1,630,389 - +0.7
1,630,389 - -0.5
1,630,389 - +0.1
1,630,460 + -0.6
1,630,460 + -1.5
1,630,460 + -0.2
1,630,482 - -0.7
1,630,532 + -0.7
1,630,532 + -0.6
1,630,533 - -0.9
1,630,560 + -0.5
1,630,560 + -0.5
1,630,560 + -3.8
1,630,560 + -0.4
1,630,561 - -0.8
1,630,561 - -1.3
1,630,562 + -0.8
1,630,562 + -1.1
1,630,562 + -1.4
1,630,562 + -0.3
1,630,562 + -0.4
1,630,562 + -0.4
1,630,562 + -0.3
1,630,562 + -1.6
1,630,562 + -0.3
1,630,562 + -0.1
1,630,563 - +0.5
1,630,563 - -1.7
1,630,563 - -0.5
1,630,563 - +0.3
1,630,563 - -0.9
1,630,563 - -0.5
1,630,563 - -1.3
1,630,563 - -0.2
1,630,661 + -0.1
1,630,694 + +0.0
1,630,694 + +0.5
1,630,694 + +0.8
1,630,694 + -0.5
1,630,694 + +0.4
1,630,694 + -0.1
1,630,694 + +0.5
1,630,695 - -0.9
1,630,695 - +0.9
1,630,695 - -0.1
1,630,695 - -1.6
1,630,696 + +0.3
1,630,769 + +0.3
1,630,770 - +0.3
1,631,128 - Psest_1528 0.45 -1.0
1,631,128 - Psest_1528 0.45 -0.9
1,631,259 + Psest_1528 0.68 -0.7
1,631,260 - Psest_1528 0.68 -1.2
1,631,260 - Psest_1528 0.68 -0.7
1,631,260 - Psest_1528 0.68 -1.3
1,631,327 + Psest_1528 0.80 -0.8
1,631,327 + Psest_1528 0.80 +0.2
1,631,328 - Psest_1528 0.81 -0.8
1,631,455 + +0.1
1,631,469 + -1.0
1,631,469 + -0.5
1,631,470 - -1.0
1,631,470 - +1.2
1,631,470 - -1.0
1,631,542 + -0.3
1,631,542 + +0.4
1,631,542 + +0.4
1,631,542 + -0.2
1,631,580 + +0.2
1,631,580 + -0.1
1,631,580 + +1.8
1,631,581 - -0.3
1,631,581 - +0.2
1,631,581 - +0.7
1,631,581 - -0.5
1,631,846 + Psest_1529 0.35 -0.3
1,631,846 + Psest_1529 0.35 +0.7
1,631,846 + Psest_1529 0.35 +1.1
1,631,846 + Psest_1529 0.35 -1.2
1,631,846 + Psest_1529 0.35 +0.6
1,631,846 + Psest_1529 0.35 -0.7
1,631,847 - Psest_1529 0.35 -1.5
1,631,847 - Psest_1529 0.35 -0.2
1,631,847 - Psest_1529 0.35 -0.1
1,631,847 - Psest_1529 0.35 +1.2
1,631,847 - Psest_1529 0.35 +0.4
1,631,848 + Psest_1529 0.35 +0.0
1,631,975 + Psest_1529 0.53 -0.2
1,632,014 + Psest_1529 0.59 +0.4
1,632,014 + Psest_1529 0.59 +0.4
1,632,014 + Psest_1529 0.59 -0.9
1,632,014 + Psest_1529 0.59 -0.6
1,632,014 + Psest_1529 0.59 -1.1
1,632,014 + Psest_1529 0.59 +0.9
1,632,014 + Psest_1529 0.59 +0.4
1,632,014 + Psest_1529 0.59 +0.4
1,632,014 + Psest_1529 0.59 -0.6
1,632,014 + Psest_1529 0.59 +0.7
1,632,014 + Psest_1529 0.59 +0.6
1,632,014 + Psest_1529 0.59 -0.6
1,632,014 + Psest_1529 0.59 +0.4
1,632,014 + Psest_1529 0.59 -0.9
1,632,014 + Psest_1529 0.59 +0.8
1,632,014 + Psest_1529 0.59 -0.1
1,632,014 + Psest_1529 0.59 +0.2
1,632,015 - Psest_1529 0.59 +0.3
1,632,015 - Psest_1529 0.59 +0.0
1,632,015 - Psest_1529 0.59 +0.4
1,632,015 - Psest_1529 0.59 +0.1
1,632,015 - Psest_1529 0.59 -0.9
1,632,015 - Psest_1529 0.59 -0.8
1,632,015 - Psest_1529 0.59 +0.6
1,632,015 - Psest_1529 0.59 -1.5
1,632,015 - Psest_1529 0.59 -0.0
1,632,015 - Psest_1529 0.59 -0.1
1,632,015 - Psest_1529 0.59 -0.8
1,632,015 - Psest_1529 0.59 -1.0
1,632,015 - Psest_1529 0.59 +0.9
1,632,015 - Psest_1529 0.59 -0.2
1,632,015 - Psest_1529 0.59 +0.1
1,632,015 - Psest_1529 0.59 -1.1
1,632,015 - Psest_1529 0.59 -0.5
1,632,015 - Psest_1529 0.59 +0.4
1,632,210 - Psest_1529 0.86 -0.2
1,632,210 - Psest_1529 0.86 -0.2
1,632,306 + +0.4
1,632,307 - -0.4
1,632,312 + +0.3
1,632,325 - +0.5
1,632,325 - +0.5
1,632,361 + Psest_1530 0.17 +0.1
1,632,421 + Psest_1530 0.35 +0.3
1,632,421 + Psest_1530 0.35 -0.2
1,632,421 + Psest_1530 0.35 -0.6
1,632,421 + Psest_1530 0.35 -1.6
1,632,422 - Psest_1530 0.35 +0.1
1,632,422 - Psest_1530 0.35 -0.1
1,632,422 - Psest_1530 0.35 -0.5
1,632,422 - Psest_1530 0.35 -0.2
1,632,422 - Psest_1530 0.35 +0.3
1,632,422 - Psest_1530 0.35 +0.2
1,632,422 - Psest_1530 0.35 -0.9
1,632,422 - Psest_1530 0.35 -0.1

Or see this region's nucleotide sequence