Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1288 and Psest_1289 are separated by 19 nucleotides Psest_1289 and Psest_1290 overlap by 4 nucleotides Psest_1290 and Psest_1291 overlap by 4 nucleotides
Psest_1288: Psest_1288 - Putative multicopper oxidases, at 1,393,733 to 1,395,103
_1288
Psest_1289: Psest_1289 - Cytosine/adenosine deaminases, at 1,395,123 to 1,395,605
_1289
Psest_1290: Psest_1290 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,395,602 to 1,396,699
_1290
Psest_1291: Psest_1291 - ornithine carbamoyltransferase, at 1,396,696 to 1,397,616
_1291
Position (kb)
1395
1396
1397 Strain fitness (log2 ratio)
-2
-1
0
1 at 1394.765 kb on + strand, within Psest_1288 at 1394.765 kb on + strand, within Psest_1288 at 1394.765 kb on + strand, within Psest_1288 at 1394.766 kb on - strand, within Psest_1288 at 1394.767 kb on + strand, within Psest_1288 at 1394.768 kb on - strand, within Psest_1288 at 1394.768 kb on - strand, within Psest_1288 at 1394.768 kb on - strand, within Psest_1288 at 1394.858 kb on + strand, within Psest_1288 at 1394.858 kb on + strand, within Psest_1288 at 1394.858 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.975 kb on + strand at 1394.975 kb on + strand at 1394.975 kb on + strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1395.065 kb on - strand at 1395.099 kb on + strand at 1395.100 kb on - strand at 1395.100 kb on - strand at 1396.710 kb on - strand at 1397.624 kb on - strand at 1397.624 kb on - strand at 1397.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 1,394,765 + Psest_1288 0.75 +0.9 1,394,765 + Psest_1288 0.75 -0.3 1,394,765 + Psest_1288 0.75 +0.1 1,394,766 - Psest_1288 0.75 +1.0 1,394,767 + Psest_1288 0.75 -1.4 1,394,768 - Psest_1288 0.75 +0.4 1,394,768 - Psest_1288 0.75 +0.4 1,394,768 - Psest_1288 0.75 +0.5 1,394,858 + Psest_1288 0.82 -0.3 1,394,858 + Psest_1288 0.82 +0.2 1,394,858 - Psest_1288 0.82 -1.2 1,394,859 - Psest_1288 0.82 +0.5 1,394,859 - Psest_1288 0.82 +1.3 1,394,859 - Psest_1288 0.82 -0.1 1,394,859 - Psest_1288 0.82 +0.5 1,394,859 - Psest_1288 0.82 +0.3 1,394,859 - Psest_1288 0.82 +0.2 1,394,859 - Psest_1288 0.82 -1.7 1,394,859 - Psest_1288 0.82 -0.0 1,394,975 + -0.4 1,394,975 + +0.2 1,394,975 + +0.3 1,394,976 - -0.2 1,394,976 - +0.4 1,394,976 - +0.2 1,394,976 - +0.7 1,394,976 - +0.7 1,394,976 - +0.1 1,394,976 - -0.1 1,395,065 - -0.1 1,395,099 + -0.6 1,395,100 - -0.8 1,395,100 - +0.3 1,396,710 - +0.7 1,397,624 - +1.7 1,397,624 - -0.0 1,397,624 - -2.0
Or see this region's nucleotide sequence