Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1290

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1288 and Psest_1289 are separated by 19 nucleotidesPsest_1289 and Psest_1290 overlap by 4 nucleotidesPsest_1290 and Psest_1291 overlap by 4 nucleotides Psest_1288: Psest_1288 - Putative multicopper oxidases, at 1,393,733 to 1,395,103 _1288 Psest_1289: Psest_1289 - Cytosine/adenosine deaminases, at 1,395,123 to 1,395,605 _1289 Psest_1290: Psest_1290 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,395,602 to 1,396,699 _1290 Psest_1291: Psest_1291 - ornithine carbamoyltransferase, at 1,396,696 to 1,397,616 _1291 Position (kb) 1395 1396 1397Strain fitness (log2 ratio) -2 -1 0 1at 1394.765 kb on + strand, within Psest_1288at 1394.765 kb on + strand, within Psest_1288at 1394.765 kb on + strand, within Psest_1288at 1394.766 kb on - strand, within Psest_1288at 1394.767 kb on + strand, within Psest_1288at 1394.768 kb on - strand, within Psest_1288at 1394.768 kb on - strand, within Psest_1288at 1394.768 kb on - strand, within Psest_1288at 1394.858 kb on + strand, within Psest_1288at 1394.858 kb on + strand, within Psest_1288at 1394.858 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.859 kb on - strand, within Psest_1288at 1394.975 kb on + strandat 1394.975 kb on + strandat 1394.975 kb on + strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1394.976 kb on - strandat 1395.065 kb on - strandat 1395.099 kb on + strandat 1395.100 kb on - strandat 1395.100 kb on - strandat 1396.710 kb on - strandat 1397.624 kb on - strandat 1397.624 kb on - strandat 1397.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,394,765 + Psest_1288 0.75 +0.9
1,394,765 + Psest_1288 0.75 -0.3
1,394,765 + Psest_1288 0.75 +0.1
1,394,766 - Psest_1288 0.75 +1.0
1,394,767 + Psest_1288 0.75 -1.4
1,394,768 - Psest_1288 0.75 +0.4
1,394,768 - Psest_1288 0.75 +0.4
1,394,768 - Psest_1288 0.75 +0.5
1,394,858 + Psest_1288 0.82 -0.3
1,394,858 + Psest_1288 0.82 +0.2
1,394,858 - Psest_1288 0.82 -1.2
1,394,859 - Psest_1288 0.82 +0.5
1,394,859 - Psest_1288 0.82 +1.3
1,394,859 - Psest_1288 0.82 -0.1
1,394,859 - Psest_1288 0.82 +0.5
1,394,859 - Psest_1288 0.82 +0.3
1,394,859 - Psest_1288 0.82 +0.2
1,394,859 - Psest_1288 0.82 -1.7
1,394,859 - Psest_1288 0.82 -0.0
1,394,975 + -0.4
1,394,975 + +0.2
1,394,975 + +0.3
1,394,976 - -0.2
1,394,976 - +0.4
1,394,976 - +0.2
1,394,976 - +0.7
1,394,976 - +0.7
1,394,976 - +0.1
1,394,976 - -0.1
1,395,065 - -0.1
1,395,099 + -0.6
1,395,100 - -0.8
1,395,100 - +0.3
1,396,710 - +0.7
1,397,624 - +1.7
1,397,624 - -0.0
1,397,624 - -2.0

Or see this region's nucleotide sequence