Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1087

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1086 and Psest_1087 are separated by 57 nucleotidesPsest_1087 and Psest_1088 are separated by 102 nucleotides Psest_1086: Psest_1086 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 1,176,259 to 1,177,941 _1086 Psest_1087: Psest_1087 - uncharacterized peroxidase-related enzyme, at 1,177,999 to 1,178,604 _1087 Psest_1088: Psest_1088 - outer membrane porin, OprD family., at 1,178,707 to 1,179,981 _1088 Position (kb) 1177 1178 1179Strain fitness (log2 ratio) -2 -1 0 1at 1177.012 kb on + strand, within Psest_1086at 1177.012 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.144 kb on + strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.145 kb on - strand, within Psest_1086at 1177.307 kb on - strand, within Psest_1086at 1177.585 kb on + strand, within Psest_1086at 1177.585 kb on + strand, within Psest_1086at 1177.585 kb on + strand, within Psest_1086at 1177.586 kb on - strand, within Psest_1086at 1177.586 kb on - strand, within Psest_1086at 1177.586 kb on - strand, within Psest_1086at 1177.586 kb on - strand, within Psest_1086at 1178.010 kb on + strandat 1178.011 kb on - strandat 1178.051 kb on + strandat 1178.051 kb on + strandat 1178.174 kb on - strand, within Psest_1087at 1178.348 kb on - strand, within Psest_1087at 1178.566 kb on + strandat 1178.567 kb on - strandat 1178.567 kb on - strandat 1178.635 kb on - strandat 1178.706 kb on + strandat 1178.706 kb on + strandat 1178.707 kb on - strandat 1178.707 kb on - strandat 1178.707 kb on - strandat 1178.836 kb on + strand, within Psest_1088at 1178.836 kb on + strand, within Psest_1088at 1178.836 kb on + strand, within Psest_1088at 1178.836 kb on + strand, within Psest_1088at 1178.836 kb on + strand, within Psest_1088at 1178.836 kb on + strand, within Psest_1088at 1178.836 kb on + strand, within Psest_1088at 1178.837 kb on - strand, within Psest_1088at 1178.837 kb on - strand, within Psest_1088at 1178.837 kb on - strand, within Psest_1088at 1178.837 kb on - strand, within Psest_1088at 1178.838 kb on + strand, within Psest_1088at 1178.839 kb on - strand, within Psest_1088at 1179.062 kb on - strand, within Psest_1088at 1179.182 kb on - strand, within Psest_1088at 1179.237 kb on + strand, within Psest_1088at 1179.237 kb on + strand, within Psest_1088at 1179.237 kb on + strand, within Psest_1088at 1179.400 kb on + strand, within Psest_1088at 1179.400 kb on + strand, within Psest_1088at 1179.400 kb on + strand, within Psest_1088at 1179.401 kb on - strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.403 kb on + strand, within Psest_1088at 1179.404 kb on - strand, within Psest_1088at 1179.404 kb on - strand, within Psest_1088at 1179.404 kb on - strand, within Psest_1088at 1179.404 kb on - strand, within Psest_1088at 1179.404 kb on - strand, within Psest_1088at 1179.407 kb on - strand, within Psest_1088at 1179.407 kb on - strand, within Psest_1088at 1179.427 kb on + strand, within Psest_1088at 1179.427 kb on + strand, within Psest_1088at 1179.428 kb on - strand, within Psest_1088at 1179.428 kb on - strand, within Psest_1088at 1179.428 kb on - strand, within Psest_1088at 1179.568 kb on + strand, within Psest_1088at 1179.568 kb on + strand, within Psest_1088at 1179.569 kb on - strand, within Psest_1088at 1179.569 kb on - strand, within Psest_1088at 1179.569 kb on - strand, within Psest_1088

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,177,012 + Psest_1086 0.45 +0.0
1,177,012 + Psest_1086 0.45 +0.7
1,177,144 + Psest_1086 0.53 +0.1
1,177,144 + Psest_1086 0.53 -2.0
1,177,144 + Psest_1086 0.53 -0.3
1,177,144 + Psest_1086 0.53 +0.4
1,177,144 + Psest_1086 0.53 +0.1
1,177,144 + Psest_1086 0.53 +0.7
1,177,144 + Psest_1086 0.53 +0.4
1,177,144 + Psest_1086 0.53 +0.8
1,177,144 + Psest_1086 0.53 +0.1
1,177,144 + Psest_1086 0.53 +0.3
1,177,144 + Psest_1086 0.53 +0.4
1,177,144 + Psest_1086 0.53 +0.5
1,177,144 + Psest_1086 0.53 -0.9
1,177,144 + Psest_1086 0.53 +1.1
1,177,144 + Psest_1086 0.53 -0.1
1,177,144 + Psest_1086 0.53 -0.4
1,177,145 - Psest_1086 0.53 -0.0
1,177,145 - Psest_1086 0.53 -0.1
1,177,145 - Psest_1086 0.53 -0.8
1,177,145 - Psest_1086 0.53 -0.7
1,177,145 - Psest_1086 0.53 +0.9
1,177,145 - Psest_1086 0.53 -0.4
1,177,145 - Psest_1086 0.53 -0.3
1,177,307 - Psest_1086 0.62 -0.3
1,177,585 + Psest_1086 0.79 +0.4
1,177,585 + Psest_1086 0.79 +0.1
1,177,585 + Psest_1086 0.79 -0.1
1,177,586 - Psest_1086 0.79 +0.5
1,177,586 - Psest_1086 0.79 +0.2
1,177,586 - Psest_1086 0.79 +0.2
1,177,586 - Psest_1086 0.79 -1.0
1,178,010 + -1.1
1,178,011 - -0.4
1,178,051 + -0.6
1,178,051 + +0.9
1,178,174 - Psest_1087 0.29 -0.1
1,178,348 - Psest_1087 0.58 -0.6
1,178,566 + -1.3
1,178,567 - +0.9
1,178,567 - +0.0
1,178,635 - -1.1
1,178,706 + -1.3
1,178,706 + -2.6
1,178,707 - -0.7
1,178,707 - -0.0
1,178,707 - -0.1
1,178,836 + Psest_1088 0.10 -0.5
1,178,836 + Psest_1088 0.10 +0.6
1,178,836 + Psest_1088 0.10 +0.5
1,178,836 + Psest_1088 0.10 +0.5
1,178,836 + Psest_1088 0.10 -0.5
1,178,836 + Psest_1088 0.10 +0.5
1,178,836 + Psest_1088 0.10 +0.2
1,178,837 - Psest_1088 0.10 -0.4
1,178,837 - Psest_1088 0.10 -1.0
1,178,837 - Psest_1088 0.10 +0.1
1,178,837 - Psest_1088 0.10 +1.7
1,178,838 + Psest_1088 0.10 -0.1
1,178,839 - Psest_1088 0.10 +0.3
1,179,062 - Psest_1088 0.28 +0.4
1,179,182 - Psest_1088 0.37 +0.2
1,179,237 + Psest_1088 0.42 -0.2
1,179,237 + Psest_1088 0.42 +0.5
1,179,237 + Psest_1088 0.42 +0.1
1,179,400 + Psest_1088 0.54 -0.7
1,179,400 + Psest_1088 0.54 -1.3
1,179,400 + Psest_1088 0.54 +0.1
1,179,401 - Psest_1088 0.54 +0.5
1,179,403 + Psest_1088 0.55 +0.4
1,179,403 + Psest_1088 0.55 -0.3
1,179,403 + Psest_1088 0.55 +0.2
1,179,403 + Psest_1088 0.55 +0.1
1,179,403 + Psest_1088 0.55 +0.0
1,179,403 + Psest_1088 0.55 -0.2
1,179,403 + Psest_1088 0.55 +1.4
1,179,404 - Psest_1088 0.55 -0.5
1,179,404 - Psest_1088 0.55 +1.4
1,179,404 - Psest_1088 0.55 +0.7
1,179,404 - Psest_1088 0.55 +0.5
1,179,404 - Psest_1088 0.55 +1.3
1,179,407 - Psest_1088 0.55 +0.2
1,179,407 - Psest_1088 0.55 -0.4
1,179,427 + Psest_1088 0.56 -0.4
1,179,427 + Psest_1088 0.56 -0.2
1,179,428 - Psest_1088 0.57 +0.2
1,179,428 - Psest_1088 0.57 +0.5
1,179,428 - Psest_1088 0.57 +1.1
1,179,568 + Psest_1088 0.68 +0.3
1,179,568 + Psest_1088 0.68 +0.3
1,179,569 - Psest_1088 0.68 +0.3
1,179,569 - Psest_1088 0.68 -1.7
1,179,569 - Psest_1088 0.68 -0.1

Or see this region's nucleotide sequence