Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1086 and Psest_1087 are separated by 57 nucleotides Psest_1087 and Psest_1088 are separated by 102 nucleotides
Psest_1086: Psest_1086 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 1,176,259 to 1,177,941
_1086
Psest_1087: Psest_1087 - uncharacterized peroxidase-related enzyme, at 1,177,999 to 1,178,604
_1087
Psest_1088: Psest_1088 - outer membrane porin, OprD family., at 1,178,707 to 1,179,981
_1088
Position (kb)
1177
1178
1179 Strain fitness (log2 ratio)
-2
-1
0
1 at 1177.012 kb on + strand, within Psest_1086 at 1177.012 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.144 kb on + strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.145 kb on - strand, within Psest_1086 at 1177.307 kb on - strand, within Psest_1086 at 1177.585 kb on + strand, within Psest_1086 at 1177.585 kb on + strand, within Psest_1086 at 1177.585 kb on + strand, within Psest_1086 at 1177.586 kb on - strand, within Psest_1086 at 1177.586 kb on - strand, within Psest_1086 at 1177.586 kb on - strand, within Psest_1086 at 1177.586 kb on - strand, within Psest_1086 at 1178.010 kb on + strand at 1178.011 kb on - strand at 1178.051 kb on + strand at 1178.051 kb on + strand at 1178.174 kb on - strand, within Psest_1087 at 1178.348 kb on - strand, within Psest_1087 at 1178.566 kb on + strand at 1178.567 kb on - strand at 1178.567 kb on - strand at 1178.635 kb on - strand at 1178.706 kb on + strand at 1178.706 kb on + strand at 1178.707 kb on - strand at 1178.707 kb on - strand at 1178.707 kb on - strand at 1178.836 kb on + strand, within Psest_1088 at 1178.836 kb on + strand, within Psest_1088 at 1178.836 kb on + strand, within Psest_1088 at 1178.836 kb on + strand, within Psest_1088 at 1178.836 kb on + strand, within Psest_1088 at 1178.836 kb on + strand, within Psest_1088 at 1178.836 kb on + strand, within Psest_1088 at 1178.837 kb on - strand, within Psest_1088 at 1178.837 kb on - strand, within Psest_1088 at 1178.837 kb on - strand, within Psest_1088 at 1178.837 kb on - strand, within Psest_1088 at 1178.838 kb on + strand, within Psest_1088 at 1178.839 kb on - strand, within Psest_1088 at 1179.062 kb on - strand, within Psest_1088 at 1179.182 kb on - strand, within Psest_1088 at 1179.237 kb on + strand, within Psest_1088 at 1179.237 kb on + strand, within Psest_1088 at 1179.237 kb on + strand, within Psest_1088 at 1179.400 kb on + strand, within Psest_1088 at 1179.400 kb on + strand, within Psest_1088 at 1179.400 kb on + strand, within Psest_1088 at 1179.401 kb on - strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.403 kb on + strand, within Psest_1088 at 1179.404 kb on - strand, within Psest_1088 at 1179.404 kb on - strand, within Psest_1088 at 1179.404 kb on - strand, within Psest_1088 at 1179.404 kb on - strand, within Psest_1088 at 1179.404 kb on - strand, within Psest_1088 at 1179.407 kb on - strand, within Psest_1088 at 1179.407 kb on - strand, within Psest_1088 at 1179.427 kb on + strand, within Psest_1088 at 1179.427 kb on + strand, within Psest_1088 at 1179.428 kb on - strand, within Psest_1088 at 1179.428 kb on - strand, within Psest_1088 at 1179.428 kb on - strand, within Psest_1088 at 1179.568 kb on + strand, within Psest_1088 at 1179.568 kb on + strand, within Psest_1088 at 1179.569 kb on - strand, within Psest_1088 at 1179.569 kb on - strand, within Psest_1088 at 1179.569 kb on - strand, within Psest_1088
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 1,177,012 + Psest_1086 0.45 +0.0 1,177,012 + Psest_1086 0.45 +0.7 1,177,144 + Psest_1086 0.53 +0.1 1,177,144 + Psest_1086 0.53 -2.0 1,177,144 + Psest_1086 0.53 -0.3 1,177,144 + Psest_1086 0.53 +0.4 1,177,144 + Psest_1086 0.53 +0.1 1,177,144 + Psest_1086 0.53 +0.7 1,177,144 + Psest_1086 0.53 +0.4 1,177,144 + Psest_1086 0.53 +0.8 1,177,144 + Psest_1086 0.53 +0.1 1,177,144 + Psest_1086 0.53 +0.3 1,177,144 + Psest_1086 0.53 +0.4 1,177,144 + Psest_1086 0.53 +0.5 1,177,144 + Psest_1086 0.53 -0.9 1,177,144 + Psest_1086 0.53 +1.1 1,177,144 + Psest_1086 0.53 -0.1 1,177,144 + Psest_1086 0.53 -0.4 1,177,145 - Psest_1086 0.53 -0.0 1,177,145 - Psest_1086 0.53 -0.1 1,177,145 - Psest_1086 0.53 -0.8 1,177,145 - Psest_1086 0.53 -0.7 1,177,145 - Psest_1086 0.53 +0.9 1,177,145 - Psest_1086 0.53 -0.4 1,177,145 - Psest_1086 0.53 -0.3 1,177,307 - Psest_1086 0.62 -0.3 1,177,585 + Psest_1086 0.79 +0.4 1,177,585 + Psest_1086 0.79 +0.1 1,177,585 + Psest_1086 0.79 -0.1 1,177,586 - Psest_1086 0.79 +0.5 1,177,586 - Psest_1086 0.79 +0.2 1,177,586 - Psest_1086 0.79 +0.2 1,177,586 - Psest_1086 0.79 -1.0 1,178,010 + -1.1 1,178,011 - -0.4 1,178,051 + -0.6 1,178,051 + +0.9 1,178,174 - Psest_1087 0.29 -0.1 1,178,348 - Psest_1087 0.58 -0.6 1,178,566 + -1.3 1,178,567 - +0.9 1,178,567 - +0.0 1,178,635 - -1.1 1,178,706 + -1.3 1,178,706 + -2.6 1,178,707 - -0.7 1,178,707 - -0.0 1,178,707 - -0.1 1,178,836 + Psest_1088 0.10 -0.5 1,178,836 + Psest_1088 0.10 +0.6 1,178,836 + Psest_1088 0.10 +0.5 1,178,836 + Psest_1088 0.10 +0.5 1,178,836 + Psest_1088 0.10 -0.5 1,178,836 + Psest_1088 0.10 +0.5 1,178,836 + Psest_1088 0.10 +0.2 1,178,837 - Psest_1088 0.10 -0.4 1,178,837 - Psest_1088 0.10 -1.0 1,178,837 - Psest_1088 0.10 +0.1 1,178,837 - Psest_1088 0.10 +1.7 1,178,838 + Psest_1088 0.10 -0.1 1,178,839 - Psest_1088 0.10 +0.3 1,179,062 - Psest_1088 0.28 +0.4 1,179,182 - Psest_1088 0.37 +0.2 1,179,237 + Psest_1088 0.42 -0.2 1,179,237 + Psest_1088 0.42 +0.5 1,179,237 + Psest_1088 0.42 +0.1 1,179,400 + Psest_1088 0.54 -0.7 1,179,400 + Psest_1088 0.54 -1.3 1,179,400 + Psest_1088 0.54 +0.1 1,179,401 - Psest_1088 0.54 +0.5 1,179,403 + Psest_1088 0.55 +0.4 1,179,403 + Psest_1088 0.55 -0.3 1,179,403 + Psest_1088 0.55 +0.2 1,179,403 + Psest_1088 0.55 +0.1 1,179,403 + Psest_1088 0.55 +0.0 1,179,403 + Psest_1088 0.55 -0.2 1,179,403 + Psest_1088 0.55 +1.4 1,179,404 - Psest_1088 0.55 -0.5 1,179,404 - Psest_1088 0.55 +1.4 1,179,404 - Psest_1088 0.55 +0.7 1,179,404 - Psest_1088 0.55 +0.5 1,179,404 - Psest_1088 0.55 +1.3 1,179,407 - Psest_1088 0.55 +0.2 1,179,407 - Psest_1088 0.55 -0.4 1,179,427 + Psest_1088 0.56 -0.4 1,179,427 + Psest_1088 0.56 -0.2 1,179,428 - Psest_1088 0.57 +0.2 1,179,428 - Psest_1088 0.57 +0.5 1,179,428 - Psest_1088 0.57 +1.1 1,179,568 + Psest_1088 0.68 +0.3 1,179,568 + Psest_1088 0.68 +0.3 1,179,569 - Psest_1088 0.68 +0.3 1,179,569 - Psest_1088 0.68 -1.7 1,179,569 - Psest_1088 0.68 -0.1
Or see this region's nucleotide sequence