Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0346

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
368,973	+		Psest_0345	0.47	+0.7
368,973	+		Psest_0345	0.47	+0.5
368,973	+		Psest_0345	0.47	-0.7
368,973	+		Psest_0345	0.47	+1.1
368,973	+		Psest_0345	0.47	+0.1
368,973	+		Psest_0345	0.47	+0.2
368,973	+		Psest_0345	0.47	+0.5
368,973	+		Psest_0345	0.47	-1.4
368,973	+		Psest_0345	0.47	-0.9
368,973	+		Psest_0345	0.47	+1.4
368,973	+		Psest_0345	0.47	-0.0
368,973	+		Psest_0345	0.47	-0.8
368,973	+		Psest_0345	0.47	+1.9
368,973	+		Psest_0345	0.47	-0.4
368,973	+		Psest_0345	0.47	+0.4
368,973	+		Psest_0345	0.47	+2.7
368,973	+		Psest_0345	0.47	-0.2
368,974	-		Psest_0345	0.47	-2.2
368,974	-		Psest_0345	0.47	+1.3
368,974	-		Psest_0345	0.47	-0.6
368,974	-		Psest_0345	0.47	+0.9
368,974	-		Psest_0345	0.47	+0.9
368,974	-		Psest_0345	0.47	-0.6
368,974	-		Psest_0345	0.47	-0.8
368,974	-		Psest_0345	0.47	-1.7
368,974	-		Psest_0345	0.47	-0.8
368,974	-		Psest_0345	0.47	-0.6
368,974	-		Psest_0345	0.47	+2.2
368,974	-		Psest_0345	0.47	+1.2
368,974	-		Psest_0345	0.47	+0.1
368,974	-		Psest_0345	0.47	-0.8
368,974	-		Psest_0345	0.47	+1.1
368,974	-		Psest_0345	0.47	+0.0
368,974	-		Psest_0345	0.47	-0.9
368,974	-		Psest_0345	0.47	+0.5
368,974	-		Psest_0345	0.47	-0.2
368,974	-		Psest_0345	0.47	-0.5
368,975	+		Psest_0345	0.47	-0.1
368,975	+		Psest_0345	0.47	+1.0
368,975	+		Psest_0345	0.47	+0.5
368,975	+		Psest_0345	0.47	+0.8
368,975	+		Psest_0345	0.47	+0.8
368,976	-		Psest_0345	0.47	-0.4
368,976	-		Psest_0345	0.47	+1.1
368,976	-		Psest_0345	0.47	-0.4
368,976	-		Psest_0345	0.47	-0.2
368,976	-		Psest_0345	0.47	+0.6
368,976	-		Psest_0345	0.47	-0.5
368,976	-		Psest_0345	0.47	-2.2
368,976	-		Psest_0345	0.47	+0.3
368,976	-		Psest_0345	0.47	-0.3
368,976	-		Psest_0345	0.47	-0.3
368,976	-		Psest_0345	0.47	+0.2
369,152	+		Psest_0345	0.82	-1.8
369,153	-		Psest_0345	0.82	+1.0
369,203	+				+0.9
369,203	+				-0.0
369,203	+				-0.3
369,203	+				-1.2
369,204	-				-0.4
369,204	-				+0.3
369,204	-				-1.8
369,218	+				-0.1
369,219	-				+0.1
369,219	-				-0.1
369,516	-				-0.7
369,525	+				+0.9
369,528	-				-0.5
369,528	-				+0.7
369,528	-				+0.8
369,528	-				-0.6
369,536	+				-0.7
369,553	-				+1.2
369,564	+				-0.6
369,566	+				-0.5
369,585	+				-1.0
369,639	-				+1.2
369,658	+				-0.5
369,659	-				+0.4
369,669	+				+0.2
369,670	-				+0.9
369,837	+				-1.2
369,837	+				+1.5
369,838	-				-1.3
369,909	-				+5.0
369,939	-				+4.9
369,939	-				+4.7
370,034	+		Psest_0346	0.27	+5.9
370,058	-		Psest_0346	0.36	+4.2
370,118	+		Psest_0346	0.58	+4.7
370,118	+		Psest_0346	0.58	+4.8
370,118	+		Psest_0346	0.58	+5.9
370,119	-		Psest_0346	0.59	+5.1
370,225	+				+5.8
370,225	+				+5.4
370,225	+				+7.0
370,226	-				+5.5
370,282	+				+4.0
370,282	+				+5.3
370,282	+				+5.7
370,282	+				+4.9
370,282	+				+5.7
370,282	+				+5.8
370,282	+				+4.2
370,282	+				+5.0
370,282	+				+4.7
370,283	-				+5.2
370,283	-				+4.4
370,283	-				+6.4
370,283	-				+4.2
370,283	-				+5.4
370,330	+				+5.6
370,330	+				+5.7
370,331	-				+5.5
370,456	+		Psest_0347	0.13	+6.0
370,480	+		Psest_0347	0.14	+5.8
370,480	+		Psest_0347	0.14	+3.6
370,481	-		Psest_0347	0.14	+6.0
370,481	-		Psest_0347	0.14	+5.4
370,481	-		Psest_0347	0.14	+4.9
370,510	+		Psest_0347	0.16	+4.7
370,564	+		Psest_0347	0.19	+5.8
370,617	+		Psest_0347	0.22	+4.6
370,621	+		Psest_0347	0.22	+4.9
370,621	+		Psest_0347	0.22	+4.8
370,621	+		Psest_0347	0.22	+4.7
370,621	+		Psest_0347	0.22	+5.4
370,621	+		Psest_0347	0.22	+5.1
370,622	-		Psest_0347	0.22	+6.2
370,622	-		Psest_0347	0.22	+4.3
370,622	-		Psest_0347	0.22	+5.9
370,622	-		Psest_0347	0.22	+4.9
370,625	+		Psest_0347	0.22	+6.4
370,626	-		Psest_0347	0.22	+5.4
370,626	-		Psest_0347	0.22	+5.3
370,723	+		Psest_0347	0.28	+5.4
370,730	+		Psest_0347	0.28	+5.3
370,731	-		Psest_0347	0.28	+6.2
370,756	+		Psest_0347	0.30	+4.6
370,756	+		Psest_0347	0.30	+5.5
370,757	-		Psest_0347	0.30	+5.1
370,757	-		Psest_0347	0.30	+5.4
370,774	+		Psest_0347	0.31	+4.8
370,774	+		Psest_0347	0.31	+5.0
370,774	+		Psest_0347	0.31	+5.2
370,774	+		Psest_0347	0.31	+5.6
370,774	+		Psest_0347	0.31	+4.7
370,774	+		Psest_0347	0.31	+4.4
370,775	-		Psest_0347	0.31	+4.5
370,775	-		Psest_0347	0.31	+4.9
370,775	-		Psest_0347	0.31	+3.5
370,775	-		Psest_0347	0.31	+5.2
370,775	-		Psest_0347	0.31	+4.7
370,775	-		Psest_0347	0.31	+5.6
370,795	+		Psest_0347	0.32	+5.7
370,795	+		Psest_0347	0.32	+5.6
370,796	-		Psest_0347	0.32	+6.6
370,796	-		Psest_0347	0.32	+6.0
370,940	-		Psest_0347	0.40	+5.3
371,021	+		Psest_0347	0.45	+5.1
371,021	+		Psest_0347	0.45	+5.6
371,021	+		Psest_0347	0.45	+5.6
371,021	+		Psest_0347	0.45	+5.9
371,021	+		Psest_0347	0.45	+3.2
371,021	+		Psest_0347	0.45	+5.9
371,021	+		Psest_0347	0.45	+6.1
371,022	-		Psest_0347	0.45	+5.4
371,022	-		Psest_0347	0.45	+4.8
371,022	-		Psest_0347	0.45	+5.0
371,022	-		Psest_0347	0.45	+5.0
371,022	-		Psest_0347	0.45	+5.1
371,022	-		Psest_0347	0.45	+4.6
371,104	+		Psest_0347	0.49	+3.8
371,162	-		Psest_0347	0.53	+5.1
371,162	-		Psest_0347	0.53	+5.0