Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1625 and Psest_1626 are separated by 45 nucleotides Psest_1626 and Psest_1627 are separated by 150 nucleotides Psest_1627 and Psest_1628 are separated by 16 nucleotides Psest_1628 and Psest_1629 are separated by 141 nucleotides Psest_1629 and Psest_1630 are separated by 6 nucleotides
Psest_1625: Psest_1625 - hypothetical protein, at 1,728,290 to 1,728,610
_1625
Psest_1626: Psest_1626 - Predicted integral membrane protein, at 1,728,656 to 1,729,093
_1626
Psest_1627: Psest_1627 - Superfamily II DNA and RNA helicases, at 1,729,244 to 1,730,575
_1627
Psest_1628: Psest_1628 - hypothetical protein, at 1,730,592 to 1,730,888
_1628
Psest_1629: Psest_1629 - hypothetical protein, at 1,731,030 to 1,731,410
_1629
Psest_1630: Psest_1630 - Transcriptional regulator, at 1,731,417 to 1,732,271
_1630
Position (kb)
1729
1730
1731 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1728.246 kb on - strand at 1728.248 kb on - strand at 1728.272 kb on - strand at 1728.351 kb on - strand, within Psest_1625 at 1728.357 kb on + strand, within Psest_1625 at 1728.358 kb on - strand, within Psest_1625 at 1728.447 kb on - strand, within Psest_1625 at 1728.608 kb on + strand at 1728.609 kb on - strand at 1728.665 kb on + strand at 1728.666 kb on - strand at 1728.666 kb on - strand at 1728.744 kb on + strand, within Psest_1626 at 1728.754 kb on - strand, within Psest_1626 at 1728.933 kb on + strand, within Psest_1626 at 1729.038 kb on + strand, within Psest_1626 at 1729.039 kb on - strand, within Psest_1626 at 1729.039 kb on - strand, within Psest_1626 at 1729.055 kb on + strand at 1729.206 kb on + strand at 1729.206 kb on + strand at 1729.206 kb on + strand at 1729.206 kb on + strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.216 kb on + strand at 1729.217 kb on - strand at 1729.236 kb on + strand at 1729.237 kb on - strand at 1729.362 kb on + strand at 1729.362 kb on + strand at 1729.362 kb on + strand at 1729.363 kb on - strand at 1729.970 kb on + strand, within Psest_1627 at 1729.970 kb on + strand, within Psest_1627 at 1729.970 kb on + strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.643 kb on + strand, within Psest_1628 at 1730.644 kb on - strand, within Psest_1628 at 1730.644 kb on - strand, within Psest_1628 at 1730.644 kb on - strand, within Psest_1628 at 1730.665 kb on + strand, within Psest_1628 at 1730.665 kb on + strand, within Psest_1628 at 1730.666 kb on - strand, within Psest_1628 at 1730.733 kb on + strand, within Psest_1628 at 1730.942 kb on - strand at 1730.942 kb on - strand at 1730.942 kb on - strand at 1730.980 kb on + strand at 1730.980 kb on + strand at 1730.980 kb on + strand at 1730.980 kb on + strand at 1730.981 kb on - strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.983 kb on - strand at 1730.984 kb on + strand at 1730.984 kb on + strand at 1730.984 kb on + strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1731.036 kb on + strand at 1731.036 kb on + strand at 1731.037 kb on - strand at 1731.037 kb on - strand at 1731.419 kb on - strand at 1731.440 kb on + strand at 1731.442 kb on + strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.544 kb on - strand, within Psest_1630
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,728,246 - +1.4 1,728,248 - +1.6 1,728,272 - +0.1 1,728,351 - Psest_1625 0.19 +3.1 1,728,357 + Psest_1625 0.21 -0.2 1,728,358 - Psest_1625 0.21 +1.3 1,728,447 - Psest_1625 0.49 +1.2 1,728,608 + -0.8 1,728,609 - +1.1 1,728,665 + +1.0 1,728,666 - +1.8 1,728,666 - +1.7 1,728,744 + Psest_1626 0.20 +0.4 1,728,754 - Psest_1626 0.22 +1.0 1,728,933 + Psest_1626 0.63 -0.4 1,729,038 + Psest_1626 0.87 -0.9 1,729,039 - Psest_1626 0.87 -0.7 1,729,039 - Psest_1626 0.87 -0.5 1,729,055 + -1.2 1,729,206 + -0.0 1,729,206 + -0.4 1,729,206 + +1.1 1,729,206 + -2.3 1,729,207 - +0.6 1,729,207 - -0.5 1,729,207 - -0.1 1,729,207 - +0.1 1,729,207 - +0.5 1,729,216 + -0.4 1,729,217 - +0.2 1,729,236 + +0.2 1,729,237 - -1.6 1,729,362 + -1.4 1,729,362 + -1.4 1,729,362 + -3.4 1,729,363 - +1.5 1,729,970 + Psest_1627 0.55 +3.7 1,729,970 + Psest_1627 0.55 -0.9 1,729,970 + Psest_1627 0.55 -0.9 1,729,971 - Psest_1627 0.55 -0.2 1,729,971 - Psest_1627 0.55 -1.8 1,729,971 - Psest_1627 0.55 -1.0 1,729,971 - Psest_1627 0.55 -1.1 1,730,222 + Psest_1627 0.73 +0.1 1,730,222 + Psest_1627 0.73 -1.7 1,730,222 + Psest_1627 0.73 +0.0 1,730,222 + Psest_1627 0.73 -2.7 1,730,223 - Psest_1627 0.73 -2.4 1,730,223 - Psest_1627 0.73 -2.5 1,730,223 - Psest_1627 0.73 -2.2 1,730,223 - Psest_1627 0.73 -0.9 1,730,223 - Psest_1627 0.73 -2.5 1,730,223 - Psest_1627 0.73 -2.1 1,730,375 + Psest_1627 0.85 -1.9 1,730,375 + Psest_1627 0.85 -1.6 1,730,375 + Psest_1627 0.85 -0.0 1,730,375 + Psest_1627 0.85 +0.9 1,730,375 + Psest_1627 0.85 -0.6 1,730,375 + Psest_1627 0.85 -0.2 1,730,375 + Psest_1627 0.85 -1.2 1,730,375 + Psest_1627 0.85 -0.7 1,730,375 + Psest_1627 0.85 +0.1 1,730,375 + Psest_1627 0.85 -0.6 1,730,375 + Psest_1627 0.85 -1.5 1,730,375 + Psest_1627 0.85 -1.6 1,730,375 + Psest_1627 0.85 -0.6 1,730,375 + Psest_1627 0.85 -1.6 1,730,376 - Psest_1627 0.85 -0.2 1,730,376 - Psest_1627 0.85 -0.2 1,730,376 - Psest_1627 0.85 -0.6 1,730,376 - Psest_1627 0.85 -1.4 1,730,376 - Psest_1627 0.85 -1.7 1,730,376 - Psest_1627 0.85 -0.8 1,730,376 - Psest_1627 0.85 -2.4 1,730,376 - Psest_1627 0.85 -1.1 1,730,376 - Psest_1627 0.85 +0.5 1,730,376 - Psest_1627 0.85 -0.2 1,730,376 - Psest_1627 0.85 +1.5 1,730,376 - Psest_1627 0.85 -0.0 1,730,376 - Psest_1627 0.85 +0.5 1,730,643 + Psest_1628 0.17 -0.1 1,730,644 - Psest_1628 0.18 +0.2 1,730,644 - Psest_1628 0.18 -0.5 1,730,644 - Psest_1628 0.18 -2.4 1,730,665 + Psest_1628 0.25 +1.0 1,730,665 + Psest_1628 0.25 -1.4 1,730,666 - Psest_1628 0.25 +1.2 1,730,733 + Psest_1628 0.47 +0.4 1,730,942 - +0.5 1,730,942 - -0.6 1,730,942 - +0.9 1,730,980 + +0.6 1,730,980 + +0.4 1,730,980 + +0.4 1,730,980 + -0.9 1,730,981 - -0.2 1,730,982 + -0.1 1,730,982 + -1.3 1,730,982 + -1.0 1,730,982 + +1.5 1,730,982 + +0.4 1,730,982 + -0.0 1,730,982 + -0.0 1,730,982 + -0.1 1,730,983 - -1.4 1,730,984 + +0.4 1,730,984 + +0.3 1,730,984 + +0.2 1,730,985 - +0.1 1,730,985 - -0.4 1,730,985 - -0.3 1,730,985 - +0.3 1,730,985 - -0.6 1,730,985 - -1.1 1,730,985 - -0.2 1,730,985 - -0.4 1,730,985 - -0.0 1,730,985 - +0.7 1,730,985 - +0.1 1,730,985 - -0.7 1,730,985 - -0.2 1,730,985 - -2.3 1,730,985 - +2.7 1,731,036 + -0.1 1,731,036 + +0.3 1,731,037 - -0.2 1,731,037 - +0.1 1,731,419 - -0.4 1,731,440 + +0.9 1,731,442 + -0.9 1,731,443 - -0.1 1,731,443 - -0.8 1,731,443 - +0.2 1,731,543 + Psest_1630 0.15 +0.3 1,731,543 + Psest_1630 0.15 +0.1 1,731,543 + Psest_1630 0.15 -1.7 1,731,543 + Psest_1630 0.15 +0.1 1,731,544 - Psest_1630 0.15 +0.7
Or see this region's nucleotide sequence