Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0347

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
369,516	-				-0.4
369,525	+				+0.6
369,528	-				-1.1
369,528	-				+0.5
369,528	-				+0.8
369,528	-				-0.6
369,536	+				+0.2
369,553	-				+1.2
369,564	+				+2.1
369,566	+				-0.1
369,585	+				+1.2
369,639	-				-1.3
369,658	+				+0.8
369,659	-				+0.8
369,669	+				+0.3
369,670	-				+1.5
369,837	+				-0.8
369,837	+				+1.4
369,838	-				-2.4
369,909	-				+5.1
369,939	-				+4.3
369,939	-				+5.8
370,034	+		Psest_0346	0.27	+4.8
370,058	-		Psest_0346	0.36	+4.6
370,118	+		Psest_0346	0.58	+5.3
370,118	+		Psest_0346	0.58	+3.6
370,118	+		Psest_0346	0.58	+4.7
370,119	-		Psest_0346	0.59	+4.6
370,225	+				+4.1
370,225	+				+5.3
370,225	+				+6.9
370,226	-				+6.6
370,282	+				+4.6
370,282	+				+4.7
370,282	+				+3.6
370,282	+				+4.7
370,282	+				+5.1
370,282	+				+5.5
370,282	+				+5.4
370,282	+				+5.3
370,282	+				+4.2
370,283	-				+5.0
370,283	-				+4.0
370,283	-				+3.1
370,283	-				+4.7
370,283	-				+3.9
370,330	+				+5.3
370,330	+				+4.8
370,331	-				+4.4
370,456	+		Psest_0347	0.13	+5.3
370,480	+		Psest_0347	0.14	+5.0
370,480	+		Psest_0347	0.14	+4.0
370,481	-		Psest_0347	0.14	+5.6
370,481	-		Psest_0347	0.14	+4.6
370,481	-		Psest_0347	0.14	+4.7
370,510	+		Psest_0347	0.16	+5.4
370,564	+		Psest_0347	0.19	+5.4
370,617	+		Psest_0347	0.22	+5.5
370,621	+		Psest_0347	0.22	+5.4
370,621	+		Psest_0347	0.22	+4.4
370,621	+		Psest_0347	0.22	+3.9
370,621	+		Psest_0347	0.22	+5.4
370,621	+		Psest_0347	0.22	+5.6
370,622	-		Psest_0347	0.22	+4.7
370,622	-		Psest_0347	0.22	+4.7
370,622	-		Psest_0347	0.22	+4.5
370,622	-		Psest_0347	0.22	+4.1
370,625	+		Psest_0347	0.22	+4.8
370,626	-		Psest_0347	0.22	+5.0
370,626	-		Psest_0347	0.22	+5.0
370,723	+		Psest_0347	0.28	+5.1
370,730	+		Psest_0347	0.28	+6.4
370,731	-		Psest_0347	0.28	+5.6
370,756	+		Psest_0347	0.30	+5.3
370,756	+		Psest_0347	0.30	+4.8
370,757	-		Psest_0347	0.30	+5.2
370,757	-		Psest_0347	0.30	+5.2
370,774	+		Psest_0347	0.31	+5.1
370,774	+		Psest_0347	0.31	+4.6
370,774	+		Psest_0347	0.31	+5.2
370,774	+		Psest_0347	0.31	+5.1
370,774	+		Psest_0347	0.31	+5.0
370,774	+		Psest_0347	0.31	+6.0
370,775	-		Psest_0347	0.31	+4.2
370,775	-		Psest_0347	0.31	+4.7
370,775	-		Psest_0347	0.31	+5.3
370,775	-		Psest_0347	0.31	+5.0
370,775	-		Psest_0347	0.31	+4.7
370,775	-		Psest_0347	0.31	+5.8
370,795	+		Psest_0347	0.32	+4.5
370,795	+		Psest_0347	0.32	+5.3
370,796	-		Psest_0347	0.32	+5.5
370,796	-		Psest_0347	0.32	+5.6
370,940	-		Psest_0347	0.40	+4.7
371,021	+		Psest_0347	0.45	+5.5
371,021	+		Psest_0347	0.45	+4.4
371,021	+		Psest_0347	0.45	+4.3
371,021	+		Psest_0347	0.45	+5.4
371,021	+		Psest_0347	0.45	+4.9
371,021	+		Psest_0347	0.45	+4.7
371,021	+		Psest_0347	0.45	+6.5
371,022	-		Psest_0347	0.45	+5.2
371,022	-		Psest_0347	0.45	+4.2
371,022	-		Psest_0347	0.45	+4.8
371,022	-		Psest_0347	0.45	+4.3
371,022	-		Psest_0347	0.45	+5.2
371,022	-		Psest_0347	0.45	+5.1
371,104	+		Psest_0347	0.49	+4.8
371,162	-		Psest_0347	0.53	+6.3
371,162	-		Psest_0347	0.53	+5.8
371,232	+		Psest_0347	0.57	+5.5
371,232	+		Psest_0347	0.57	+4.5
371,233	-		Psest_0347	0.57	+3.9
371,233	-		Psest_0347	0.57	+4.7
371,233	-		Psest_0347	0.57	+4.1
371,233	-		Psest_0347	0.57	+5.1
371,284	+		Psest_0347	0.59	+3.0
371,284	+		Psest_0347	0.59	+3.6
371,284	+		Psest_0347	0.59	+4.2
371,284	+		Psest_0347	0.59	+3.4
371,284	+		Psest_0347	0.59	+4.7
371,284	+		Psest_0347	0.59	+1.4
371,284	+		Psest_0347	0.59	+4.3
371,285	-		Psest_0347	0.60	+4.2
371,285	-		Psest_0347	0.60	+2.5
371,285	-		Psest_0347	0.60	+4.0
371,285	-		Psest_0347	0.60	+5.4
371,285	-		Psest_0347	0.60	+4.3
371,285	-		Psest_0347	0.60	+4.4
371,285	-		Psest_0347	0.60	+4.3
371,285	-		Psest_0347	0.60	+3.9
371,633	+		Psest_0347	0.79	+5.3
371,634	-		Psest_0347	0.79	+5.1
371,691	+		Psest_0347	0.82	+6.8
371,691	+		Psest_0347	0.82	+4.0
371,691	+		Psest_0347	0.82	+4.3
371,764	+		Psest_0347	0.87	+5.0
371,764	+		Psest_0347	0.87	+4.5
371,764	+		Psest_0347	0.87	+4.0
371,764	+		Psest_0347	0.87	+4.8
371,764	+		Psest_0347	0.87	+4.6
371,764	+		Psest_0347	0.87	+4.3
371,764	+		Psest_0347	0.87	+4.7
371,764	+		Psest_0347	0.87	+5.2
371,764	+		Psest_0347	0.87	+3.9
371,764	+		Psest_0347	0.87	+3.8
371,764	+		Psest_0347	0.87	+4.7
371,765	-		Psest_0347	0.87	+4.7
371,765	-		Psest_0347	0.87	+3.9
371,765	-		Psest_0347	0.87	+3.9
371,765	-		Psest_0347	0.87	+4.8
371,776	+		Psest_0347	0.87	+4.0
371,899	+				+4.9
371,998	+				-1.6
372,005	+				-2.2
372,005	+				-0.9
372,005	+				-0.1
372,048	+				-0.0
372,048	+				-1.2
372,048	+				+0.1
372,048	+				+2.8
372,048	+				-0.5
372,048	+				+0.3
372,048	+				-0.5
372,049	-				+0.5
372,049	-				+0.3
372,095	+				-0.0
372,095	+				-0.7
372,095	+				+0.1
372,095	+				-0.5
372,095	+				+0.4
372,095	+				+0.5
372,095	+				+0.8
372,095	+				-0.8
372,095	+				-1.2
372,095	+				-0.2
372,095	+				+1.6
372,095	+				-0.1
372,095	+				-0.0
372,095	+				-0.7
372,095	+				-0.3
372,095	+				-0.3
372,095	+				+0.0
372,095	+				+0.2
372,095	+				-0.9
372,095	+				+0.5
372,095	+				-0.6
372,095	+				-0.5
372,095	+				-0.2
372,095	+				-0.7
372,095	+				-1.1
372,095	+				+0.3
372,095	+				-0.4
372,095	+				-0.8
372,095	+				-0.1
372,095	+				-1.3
372,095	+				-1.4
372,095	+				-0.1
372,095	+				+0.0
372,096	-				-3.0
372,096	-				-1.1
372,096	-				-1.2
372,096	-				-1.5
372,096	-				-2.0
372,096	-				-2.5
372,096	-				+0.6
372,096	-				-1.7
372,096	-				-0.5
372,096	-				+0.5
372,096	-				-0.3
372,096	-				-3.0
372,096	-				-2.6
372,096	-				-0.3
372,096	-				-1.0
372,096	-				-2.3
372,096	-				-2.0
372,096	-				-0.6
372,096	-				-2.4
372,096	-				-1.5
372,097	+				+0.6
372,097	+				-1.1
372,097	+				+0.0
372,097	+				-0.3
372,097	+				-0.9
372,097	+				-1.3
372,097	+				-1.1
372,097	+				-0.2
372,097	+				+2.1
372,097	+				-1.0
372,097	+				-0.7
372,097	+				+1.5
372,097	+				+0.0
372,097	+				+1.0
372,097	+				-0.6
372,097	+				-0.5
372,097	+				-0.9
372,097	+				-0.9
372,097	+				+0.0
372,097	+				-0.3
372,097	+				-2.1
372,097	+				-0.8
372,098	-				-1.8
372,098	-				-1.7
372,098	-				-1.2
372,098	-				-0.7
372,098	-				-1.7
372,098	-				-1.7
372,098	-				-1.7
372,098	-				-1.6
372,098	-				-1.8
372,098	-				-1.0
372,098	-				+0.0
372,098	-				+0.1
372,098	-				-2.1
372,098	-				-2.3
372,098	-				-0.3
372,111	+				-0.5
372,111	+				-0.7
372,111	+				-2.8
372,112	-				-0.7
372,112	-				-2.1
372,112	-				-0.6
372,112	-				-1.0
372,179	-		Psest_0348	0.16	-2.8
372,233	+		Psest_0348	0.26	-1.6
372,233	+		Psest_0348	0.26	-0.1
372,234	-		Psest_0348	0.26	-1.5
372,234	-		Psest_0348	0.26	+0.4
372,234	-		Psest_0348	0.26	+0.1
372,246	-		Psest_0348	0.29	-1.0
372,368	+		Psest_0348	0.52	-0.7
372,368	+		Psest_0348	0.52	-0.2
372,368	+		Psest_0348	0.52	-1.2
372,370	+		Psest_0348	0.52	-0.2
372,370	+		Psest_0348	0.52	+0.3
372,370	+		Psest_0348	0.52	-0.6
372,371	-		Psest_0348	0.53	-2.2
372,371	-		Psest_0348	0.53	-0.5
372,587	+				-1.4
372,587	+				-1.4
372,588	-				-0.7
372,595	+				-1.5
372,596	-				+0.3
372,596	-				-0.1
372,596	-				-0.6
372,618	+				-1.2
372,618	+				+0.3
372,618	+				+0.5
372,618	+				-0.2
372,618	+				-0.3
372,618	+				-0.4
372,618	+				+0.3
372,760	-				+1.1
372,760	-				+0.2
372,760	-				+1.6
372,959	+		Psest_0349	0.23	+4.0
372,973	+		Psest_0349	0.25	+4.7
372,973	+		Psest_0349	0.25	+3.7
372,973	+		Psest_0349	0.25	+4.0
372,974	-		Psest_0349	0.25	+1.5