Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3435

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3434 and Psest_3435 are separated by 15 nucleotidesPsest_3435 and Psest_3436 are separated by 17 nucleotidesPsest_3436 and Psest_3437 are separated by 12 nucleotides Psest_3434: Psest_3434 - Serine phosphatase RsbU, regulator of sigma subunit, at 3,603,802 to 3,605,793 _3434 Psest_3435: Psest_3435 - hypothetical protein, at 3,605,809 to 3,606,351 _3435 Psest_3436: Psest_3436 - Domain of unknown function (DUF1987)., at 3,606,369 to 3,606,746 _3436 Psest_3437: Psest_3437 - diguanylate cyclase (GGDEF) domain, at 3,606,759 to 3,607,544 _3437 Position (kb) 3605 3606 3607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3604.873 kb on + strand, within Psest_3434at 3604.880 kb on + strand, within Psest_3434at 3604.880 kb on + strand, within Psest_3434at 3604.881 kb on - strand, within Psest_3434at 3604.881 kb on - strand, within Psest_3434at 3605.066 kb on - strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.176 kb on + strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.177 kb on - strand, within Psest_3434at 3605.182 kb on + strand, within Psest_3434at 3605.217 kb on - strand, within Psest_3434at 3605.217 kb on - strand, within Psest_3434at 3605.416 kb on + strand, within Psest_3434at 3605.416 kb on + strand, within Psest_3434at 3605.416 kb on + strand, within Psest_3434at 3605.416 kb on + strand, within Psest_3434at 3605.417 kb on - strand, within Psest_3434at 3605.417 kb on - strand, within Psest_3434at 3605.417 kb on - strand, within Psest_3434at 3605.417 kb on - strand, within Psest_3434at 3605.417 kb on - strand, within Psest_3434at 3605.417 kb on - strand, within Psest_3434at 3605.470 kb on + strand, within Psest_3434at 3605.471 kb on - strand, within Psest_3434at 3605.473 kb on + strand, within Psest_3434at 3605.473 kb on + strand, within Psest_3434at 3605.474 kb on - strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.587 kb on + strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.588 kb on - strand, within Psest_3434at 3605.734 kb on + strandat 3605.746 kb on + strandat 3605.774 kb on + strandat 3605.774 kb on + strandat 3605.774 kb on + strandat 3605.774 kb on + strandat 3605.774 kb on + strandat 3605.774 kb on + strandat 3605.774 kb on + strandat 3605.775 kb on - strandat 3605.775 kb on - strandat 3605.775 kb on - strandat 3605.775 kb on - strandat 3605.775 kb on - strandat 3605.775 kb on - strandat 3605.775 kb on - strandat 3605.846 kb on - strandat 3605.910 kb on - strand, within Psest_3435at 3605.910 kb on - strand, within Psest_3435at 3605.929 kb on + strand, within Psest_3435at 3605.929 kb on + strand, within Psest_3435at 3605.929 kb on + strand, within Psest_3435at 3605.930 kb on - strand, within Psest_3435at 3605.930 kb on - strand, within Psest_3435at 3605.930 kb on - strand, within Psest_3435at 3605.930 kb on - strand, within Psest_3435at 3605.930 kb on - strand, within Psest_3435at 3605.984 kb on - strand, within Psest_3435at 3606.013 kb on + strand, within Psest_3435at 3606.014 kb on - strand, within Psest_3435at 3606.088 kb on + strand, within Psest_3435at 3606.089 kb on - strand, within Psest_3435at 3606.089 kb on - strand, within Psest_3435at 3606.193 kb on + strand, within Psest_3435at 3606.194 kb on - strand, within Psest_3435at 3606.194 kb on - strand, within Psest_3435at 3606.474 kb on + strand, within Psest_3436at 3606.474 kb on + strand, within Psest_3436at 3606.475 kb on - strand, within Psest_3436at 3606.495 kb on + strand, within Psest_3436at 3606.495 kb on + strand, within Psest_3436at 3606.496 kb on - strand, within Psest_3436at 3606.496 kb on - strand, within Psest_3436at 3606.496 kb on - strand, within Psest_3436at 3606.496 kb on - strand, within Psest_3436at 3606.496 kb on - strand, within Psest_3436at 3606.561 kb on + strand, within Psest_3436at 3606.562 kb on - strand, within Psest_3436at 3606.562 kb on - strand, within Psest_3436at 3606.562 kb on - strand, within Psest_3436at 3606.562 kb on - strand, within Psest_3436at 3606.621 kb on + strand, within Psest_3436at 3606.657 kb on + strand, within Psest_3436at 3606.657 kb on + strand, within Psest_3436at 3606.658 kb on - strand, within Psest_3436at 3606.658 kb on - strand, within Psest_3436at 3606.758 kb on + strandat 3606.759 kb on - strandat 3606.759 kb on - strandat 3607.140 kb on + strand, within Psest_3437

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,604,873 + Psest_3434 0.54 +2.2
3,604,880 + Psest_3434 0.54 -0.2
3,604,880 + Psest_3434 0.54 +0.1
3,604,881 - Psest_3434 0.54 -0.2
3,604,881 - Psest_3434 0.54 +1.6
3,605,066 - Psest_3434 0.63 -0.1
3,605,176 + Psest_3434 0.69 +0.9
3,605,176 + Psest_3434 0.69 +0.7
3,605,176 + Psest_3434 0.69 -2.4
3,605,176 + Psest_3434 0.69 +0.8
3,605,176 + Psest_3434 0.69 +0.2
3,605,176 + Psest_3434 0.69 +1.0
3,605,176 + Psest_3434 0.69 +0.8
3,605,176 + Psest_3434 0.69 +0.4
3,605,176 + Psest_3434 0.69 -0.6
3,605,176 + Psest_3434 0.69 +1.1
3,605,176 + Psest_3434 0.69 +1.6
3,605,176 + Psest_3434 0.69 +0.2
3,605,176 + Psest_3434 0.69 +1.4
3,605,176 + Psest_3434 0.69 +1.6
3,605,176 + Psest_3434 0.69 +1.3
3,605,176 + Psest_3434 0.69 -0.6
3,605,176 + Psest_3434 0.69 -0.8
3,605,176 + Psest_3434 0.69 +0.1
3,605,176 + Psest_3434 0.69 +0.4
3,605,176 + Psest_3434 0.69 +0.5
3,605,176 + Psest_3434 0.69 +0.6
3,605,176 + Psest_3434 0.69 +2.4
3,605,177 - Psest_3434 0.69 +0.2
3,605,177 - Psest_3434 0.69 +1.4
3,605,177 - Psest_3434 0.69 +1.6
3,605,177 - Psest_3434 0.69 +0.3
3,605,177 - Psest_3434 0.69 +1.1
3,605,177 - Psest_3434 0.69 +1.1
3,605,177 - Psest_3434 0.69 +2.0
3,605,177 - Psest_3434 0.69 +0.3
3,605,177 - Psest_3434 0.69 +0.1
3,605,177 - Psest_3434 0.69 +0.7
3,605,177 - Psest_3434 0.69 +0.7
3,605,177 - Psest_3434 0.69 +0.9
3,605,177 - Psest_3434 0.69 +0.2
3,605,177 - Psest_3434 0.69 +0.6
3,605,177 - Psest_3434 0.69 -0.7
3,605,177 - Psest_3434 0.69 +0.5
3,605,177 - Psest_3434 0.69 +1.0
3,605,177 - Psest_3434 0.69 -1.0
3,605,182 + Psest_3434 0.69 +0.6
3,605,217 - Psest_3434 0.71 +1.2
3,605,217 - Psest_3434 0.71 +0.4
3,605,416 + Psest_3434 0.81 +0.9
3,605,416 + Psest_3434 0.81 +0.4
3,605,416 + Psest_3434 0.81 +0.6
3,605,416 + Psest_3434 0.81 +0.3
3,605,417 - Psest_3434 0.81 +2.0
3,605,417 - Psest_3434 0.81 +1.2
3,605,417 - Psest_3434 0.81 -1.7
3,605,417 - Psest_3434 0.81 +1.6
3,605,417 - Psest_3434 0.81 +0.8
3,605,417 - Psest_3434 0.81 +0.0
3,605,470 + Psest_3434 0.84 +1.1
3,605,471 - Psest_3434 0.84 +0.2
3,605,473 + Psest_3434 0.84 -0.5
3,605,473 + Psest_3434 0.84 +1.1
3,605,474 - Psest_3434 0.84 +1.2
3,605,587 + Psest_3434 0.90 +2.1
3,605,587 + Psest_3434 0.90 +0.8
3,605,587 + Psest_3434 0.90 +0.6
3,605,587 + Psest_3434 0.90 +0.4
3,605,587 + Psest_3434 0.90 -0.2
3,605,587 + Psest_3434 0.90 +0.6
3,605,587 + Psest_3434 0.90 +1.0
3,605,587 + Psest_3434 0.90 +0.8
3,605,587 + Psest_3434 0.90 +1.5
3,605,587 + Psest_3434 0.90 +0.6
3,605,587 + Psest_3434 0.90 -1.2
3,605,588 - Psest_3434 0.90 -0.0
3,605,588 - Psest_3434 0.90 +1.6
3,605,588 - Psest_3434 0.90 +0.9
3,605,588 - Psest_3434 0.90 +0.8
3,605,588 - Psest_3434 0.90 +0.6
3,605,588 - Psest_3434 0.90 +0.8
3,605,588 - Psest_3434 0.90 +0.5
3,605,588 - Psest_3434 0.90 +0.4
3,605,588 - Psest_3434 0.90 +0.2
3,605,734 + +1.0
3,605,746 + +0.1
3,605,774 + +0.7
3,605,774 + +0.7
3,605,774 + +0.5
3,605,774 + -0.4
3,605,774 + -0.1
3,605,774 + +0.9
3,605,774 + +1.0
3,605,775 - +1.1
3,605,775 - +0.7
3,605,775 - +1.0
3,605,775 - +0.6
3,605,775 - +0.2
3,605,775 - +1.8
3,605,775 - -1.0
3,605,846 - +0.7
3,605,910 - Psest_3435 0.19 +0.9
3,605,910 - Psest_3435 0.19 +0.6
3,605,929 + Psest_3435 0.22 -2.2
3,605,929 + Psest_3435 0.22 -3.0
3,605,929 + Psest_3435 0.22 -0.6
3,605,930 - Psest_3435 0.22 -1.4
3,605,930 - Psest_3435 0.22 +0.7
3,605,930 - Psest_3435 0.22 +0.6
3,605,930 - Psest_3435 0.22 +0.7
3,605,930 - Psest_3435 0.22 +0.3
3,605,984 - Psest_3435 0.32 +0.6
3,606,013 + Psest_3435 0.38 -2.3
3,606,014 - Psest_3435 0.38 +0.6
3,606,088 + Psest_3435 0.51 -2.2
3,606,089 - Psest_3435 0.52 +0.8
3,606,089 - Psest_3435 0.52 +0.7
3,606,193 + Psest_3435 0.71 -3.0
3,606,194 - Psest_3435 0.71 +0.2
3,606,194 - Psest_3435 0.71 -1.8
3,606,474 + Psest_3436 0.28 +0.2
3,606,474 + Psest_3436 0.28 +0.7
3,606,475 - Psest_3436 0.28 +0.9
3,606,495 + Psest_3436 0.33 +1.5
3,606,495 + Psest_3436 0.33 +0.7
3,606,496 - Psest_3436 0.34 +0.0
3,606,496 - Psest_3436 0.34 +1.2
3,606,496 - Psest_3436 0.34 +0.3
3,606,496 - Psest_3436 0.34 +0.3
3,606,496 - Psest_3436 0.34 +0.8
3,606,561 + Psest_3436 0.51 +1.0
3,606,562 - Psest_3436 0.51 +0.1
3,606,562 - Psest_3436 0.51 +0.9
3,606,562 - Psest_3436 0.51 +0.0
3,606,562 - Psest_3436 0.51 +0.6
3,606,621 + Psest_3436 0.67 +0.7
3,606,657 + Psest_3436 0.76 +0.1
3,606,657 + Psest_3436 0.76 +0.0
3,606,658 - Psest_3436 0.76 +1.2
3,606,658 - Psest_3436 0.76 +0.5
3,606,758 + +0.2
3,606,759 - +0.9
3,606,759 - -0.2
3,607,140 + Psest_3437 0.48 +0.4

Or see this region's nucleotide sequence