Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33470

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33465 and AZOBR_RS33470 are separated by 528 nucleotidesAZOBR_RS33470 and AZOBR_RS33475 are separated by 5 nucleotidesAZOBR_RS33475 and AZOBR_RS33480 are separated by 201 nucleotides AZOBR_RS33465: AZOBR_RS33465 - GDP-mannose 4 6-dehydratase, at 21,716 to 22,696 _RS33465 AZOBR_RS33470: AZOBR_RS33470 - sugar ABC transporter permease, at 23,225 to 24,040 _RS33470 AZOBR_RS33475: AZOBR_RS33475 - sugar ABC transporter ATP-binding protein, at 24,046 to 24,822 _RS33475 AZOBR_RS33480: AZOBR_RS33480 - hydrolase, at 25,024 to 25,740 _RS33480 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 22.227 kb on + strandat 22.305 kb on + strand, within AZOBR_RS33465at 22.305 kb on + strand, within AZOBR_RS33465at 22.612 kb on - strandat 22.621 kb on - strandat 22.650 kb on + strandat 22.651 kb on - strandat 22.651 kb on - strandat 22.704 kb on + strandat 22.705 kb on - strandat 22.708 kb on + strandat 22.709 kb on - strandat 22.709 kb on - strandat 22.895 kb on + strandat 22.904 kb on + strandat 22.905 kb on - strandat 23.000 kb on - strandat 23.000 kb on - strandat 23.086 kb on + strandat 23.152 kb on + strandat 23.152 kb on + strandat 23.152 kb on + strandat 23.152 kb on + strandat 23.213 kb on + strandat 23.456 kb on + strand, within AZOBR_RS33470at 23.618 kb on + strandat 23.619 kb on - strand, within AZOBR_RS33470at 23.662 kb on - strand, within AZOBR_RS33470at 23.889 kb on - strand, within AZOBR_RS33470at 23.956 kb on - strandat 24.002 kb on + strandat 24.002 kb on + strandat 24.051 kb on + strandat 24.293 kb on - strand, within AZOBR_RS33475at 24.506 kb on - strandat 24.775 kb on + strandat 24.776 kb on - strandat 24.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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22,227 + +0.5
22,305 + AZOBR_RS33465 0.60 -1.3
22,305 + AZOBR_RS33465 0.60 +1.5
22,612 - -1.5
22,621 - +0.5
22,650 + -1.4
22,651 - -0.1
22,651 - -0.6
22,704 + -0.3
22,705 - -1.3
22,708 + -0.3
22,709 - -0.7
22,709 - -2.7
22,895 + -1.3
22,904 + -0.1
22,905 - -1.3
23,000 - -0.8
23,000 - +0.2
23,086 + +0.4
23,152 + +1.3
23,152 + +1.8
23,152 + -0.3
23,152 + -0.2
23,213 + -1.6
23,456 + AZOBR_RS33470 0.28 +0.2
23,618 + +1.5
23,619 - AZOBR_RS33470 0.48 +0.7
23,662 - AZOBR_RS33470 0.54 +0.9
23,889 - AZOBR_RS33470 0.81 +1.0
23,956 - +0.9
24,002 + -0.1
24,002 + -0.1
24,051 + -0.8
24,293 - AZOBR_RS33475 0.32 -0.8
24,506 - -0.1
24,775 + -2.3
24,776 - -0.9
24,976 - +0.4

Or see this region's nucleotide sequence