Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26610

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26605 and AZOBR_RS26610 are separated by 159 nucleotidesAZOBR_RS26610 and AZOBR_RS26615 are separated by 20 nucleotidesAZOBR_RS26615 and AZOBR_RS26620 are separated by 244 nucleotides AZOBR_RS26605: AZOBR_RS26605 - TonB-denpendent receptor, at 112,582 to 115,071 _RS26605 AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274 _RS26610 AZOBR_RS26615: AZOBR_RS26615 - RNA polymerase, at 116,295 to 116,888 _RS26615 AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807 _RS26620 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.350 kb on + strand, within AZOBR_RS26605at 114.350 kb on + strand, within AZOBR_RS26605at 114.351 kb on - strand, within AZOBR_RS26605at 114.351 kb on - strand, within AZOBR_RS26605at 114.351 kb on - strand, within AZOBR_RS26605at 114.464 kb on + strand, within AZOBR_RS26605at 114.464 kb on + strand, within AZOBR_RS26605at 114.464 kb on + strand, within AZOBR_RS26605at 114.465 kb on - strand, within AZOBR_RS26605at 114.465 kb on - strand, within AZOBR_RS26605at 114.465 kb on - strand, within AZOBR_RS26605at 114.597 kb on - strand, within AZOBR_RS26605at 114.597 kb on - strand, within AZOBR_RS26605at 114.713 kb on + strand, within AZOBR_RS26605at 114.960 kb on - strandat 115.050 kb on + strandat 115.246 kb on + strandat 115.397 kb on + strand, within AZOBR_RS26610at 115.397 kb on + strand, within AZOBR_RS26610at 115.622 kb on + strand, within AZOBR_RS26610at 115.622 kb on + strand, within AZOBR_RS26610at 115.623 kb on - strand, within AZOBR_RS26610at 116.313 kb on + strandat 116.313 kb on + strandat 116.313 kb on + strandat 116.314 kb on - strandat 116.314 kb on - strandat 116.314 kb on - strandat 116.764 kb on + strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 117.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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114,350 + AZOBR_RS26605 0.71 -0.1
114,350 + AZOBR_RS26605 0.71 -0.7
114,351 - AZOBR_RS26605 0.71 +0.4
114,351 - AZOBR_RS26605 0.71 -3.6
114,351 - AZOBR_RS26605 0.71 -2.2
114,464 + AZOBR_RS26605 0.76 -0.7
114,464 + AZOBR_RS26605 0.76 -1.8
114,464 + AZOBR_RS26605 0.76 -2.0
114,465 - AZOBR_RS26605 0.76 -1.6
114,465 - AZOBR_RS26605 0.76 -0.0
114,465 - AZOBR_RS26605 0.76 -0.1
114,597 - AZOBR_RS26605 0.81 +0.4
114,597 - AZOBR_RS26605 0.81 -1.7
114,713 + AZOBR_RS26605 0.86 +0.0
114,960 - -1.0
115,050 + +0.0
115,246 + -2.2
115,397 + AZOBR_RS26610 0.16 -0.0
115,397 + AZOBR_RS26610 0.16 +0.4
115,622 + AZOBR_RS26610 0.37 +0.2
115,622 + AZOBR_RS26610 0.37 -3.2
115,623 - AZOBR_RS26610 0.38 -0.3
116,313 + +0.9
116,313 + -3.7
116,313 + +2.0
116,314 - -1.3
116,314 - +1.0
116,314 - -0.7
116,764 + AZOBR_RS26615 0.79 -0.7
116,765 - AZOBR_RS26615 0.79 -1.7
116,765 - AZOBR_RS26615 0.79 -1.9
116,765 - AZOBR_RS26615 0.79 -0.2
117,134 + -2.8

Or see this region's nucleotide sequence