Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25960

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25950 and AZOBR_RS25955 overlap by 4 nucleotidesAZOBR_RS25955 and AZOBR_RS25960 are separated by 22 nucleotidesAZOBR_RS25960 and AZOBR_RS25965 are separated by 18 nucleotides AZOBR_RS25950: AZOBR_RS25950 - chemotaxis protein, at 874,351 to 876,102 _RS25950 AZOBR_RS25955: AZOBR_RS25955 - hypothetical protein, at 876,099 to 876,326 _RS25955 AZOBR_RS25960: AZOBR_RS25960 - chemotaxis CheW, at 876,349 to 877,914 _RS25960 AZOBR_RS25965: AZOBR_RS25965 - chemotaxis protein CheY, at 877,933 to 879,018 _RS25965 Position (kb) 876 877 878Strain fitness (log2 ratio) -2 -1 0 1at 877.484 kb on - strand, within AZOBR_RS25960at 878.091 kb on + strand, within AZOBR_RS25965at 878.092 kb on - strand, within AZOBR_RS25965at 878.092 kb on - strand, within AZOBR_RS25965at 878.469 kb on - strand, within AZOBR_RS25965at 878.469 kb on - strand, within AZOBR_RS25965

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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877,484 - AZOBR_RS25960 0.72 -1.4
878,091 + AZOBR_RS25965 0.15 +0.1
878,092 - AZOBR_RS25965 0.15 -1.9
878,092 - AZOBR_RS25965 0.15 -0.2
878,469 - AZOBR_RS25965 0.49 +0.9
878,469 - AZOBR_RS25965 0.49 +1.5

Or see this region's nucleotide sequence