Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21705

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21695 and AZOBR_RS21700 are separated by 190 nucleotidesAZOBR_RS21700 and AZOBR_RS21705 overlap by 4 nucleotidesAZOBR_RS21705 and AZOBR_RS21710 overlap by 4 nucleotidesAZOBR_RS21710 and AZOBR_RS21715 are separated by 8 nucleotides AZOBR_RS21695: AZOBR_RS21695 - hypothetical protein, at 1,645,204 to 1,645,683 _RS21695 AZOBR_RS21700: AZOBR_RS21700 - hypothetical protein, at 1,645,874 to 1,646,392 _RS21700 AZOBR_RS21705: AZOBR_RS21705 - 2-aminobenzoate-CoA ligase, at 1,646,389 to 1,648,026 _RS21705 AZOBR_RS21710: AZOBR_RS21710 - conserved membrane protein of unknown function, at 1,648,023 to 1,648,436 _RS21710 AZOBR_RS21715: AZOBR_RS21715 - hypothetical protein, at 1,648,445 to 1,649,116 _RS21715 Position (kb) 1646 1647 1648 1649Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1645.666 kb on + strandat 1645.788 kb on + strandat 1645.789 kb on - strandat 1645.789 kb on - strandat 1645.794 kb on - strandat 1645.794 kb on - strandat 1645.794 kb on - strandat 1645.794 kb on - strandat 1646.157 kb on + strand, within AZOBR_RS21700at 1646.158 kb on - strand, within AZOBR_RS21700at 1646.158 kb on - strand, within AZOBR_RS21700at 1646.158 kb on - strand, within AZOBR_RS21700at 1646.158 kb on - strand, within AZOBR_RS21700at 1646.158 kb on - strand, within AZOBR_RS21700at 1646.158 kb on - strand, within AZOBR_RS21700at 1646.587 kb on + strand, within AZOBR_RS21705at 1647.616 kb on + strand, within AZOBR_RS21705at 1647.616 kb on + strand, within AZOBR_RS21705at 1647.617 kb on - strand, within AZOBR_RS21705at 1647.892 kb on + strandat 1648.197 kb on + strand, within AZOBR_RS21710at 1648.198 kb on - strand, within AZOBR_RS21710at 1648.198 kb on - strand, within AZOBR_RS21710at 1648.198 kb on - strand, within AZOBR_RS21710at 1648.338 kb on + strand, within AZOBR_RS21710at 1648.438 kb on + strandat 1648.551 kb on + strand, within AZOBR_RS21715at 1648.551 kb on + strand, within AZOBR_RS21715at 1648.552 kb on - strand, within AZOBR_RS21715at 1648.788 kb on + strand, within AZOBR_RS21715at 1648.788 kb on + strand, within AZOBR_RS21715at 1648.788 kb on + strand, within AZOBR_RS21715at 1648.789 kb on - strand, within AZOBR_RS21715at 1648.789 kb on - strand, within AZOBR_RS21715at 1648.789 kb on - strand, within AZOBR_RS21715at 1648.929 kb on + strand, within AZOBR_RS21715

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,645,666 + +0.2
1,645,788 + -0.3
1,645,789 - +0.4
1,645,789 - -1.4
1,645,794 - -1.2
1,645,794 - -0.1
1,645,794 - -0.4
1,645,794 - +0.8
1,646,157 + AZOBR_RS21700 0.55 -0.9
1,646,158 - AZOBR_RS21700 0.55 +2.4
1,646,158 - AZOBR_RS21700 0.55 -1.3
1,646,158 - AZOBR_RS21700 0.55 +0.1
1,646,158 - AZOBR_RS21700 0.55 +0.1
1,646,158 - AZOBR_RS21700 0.55 -0.1
1,646,158 - AZOBR_RS21700 0.55 -0.6
1,646,587 + AZOBR_RS21705 0.12 +0.8
1,647,616 + AZOBR_RS21705 0.75 +0.8
1,647,616 + AZOBR_RS21705 0.75 +0.1
1,647,617 - AZOBR_RS21705 0.75 +1.4
1,647,892 + +2.3
1,648,197 + AZOBR_RS21710 0.42 +0.3
1,648,198 - AZOBR_RS21710 0.42 -0.4
1,648,198 - AZOBR_RS21710 0.42 -1.4
1,648,198 - AZOBR_RS21710 0.42 -1.6
1,648,338 + AZOBR_RS21710 0.76 -0.8
1,648,438 + -0.9
1,648,551 + AZOBR_RS21715 0.16 -2.0
1,648,551 + AZOBR_RS21715 0.16 -2.4
1,648,552 - AZOBR_RS21715 0.16 +0.7
1,648,788 + AZOBR_RS21715 0.51 +1.2
1,648,788 + AZOBR_RS21715 0.51 +3.2
1,648,788 + AZOBR_RS21715 0.51 -1.2
1,648,789 - AZOBR_RS21715 0.51 +0.5
1,648,789 - AZOBR_RS21715 0.51 -3.2
1,648,789 - AZOBR_RS21715 0.51 +0.5
1,648,929 + AZOBR_RS21715 0.72 +0.8

Or see this region's nucleotide sequence