Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21130

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21125 and AZOBR_RS21130 are separated by 745 nucleotidesAZOBR_RS21130 and AZOBR_RS21135 overlap by 4 nucleotides AZOBR_RS21125: AZOBR_RS21125 - hypothetical protein, at 1,517,898 to 1,519,436 _RS21125 AZOBR_RS21130: AZOBR_RS21130 - Fis family transcriptional regulator, at 1,520,182 to 1,521,561 _RS21130 AZOBR_RS21135: AZOBR_RS21135 - histidine kinase, at 1,521,558 to 1,523,324 _RS21135 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -1 0 1at 1519.473 kb on - strandat 1519.516 kb on + strandat 1519.516 kb on + strandat 1520.017 kb on + strandat 1520.018 kb on - strandat 1520.085 kb on + strandat 1520.112 kb on + strandat 1520.113 kb on - strandat 1520.113 kb on - strandat 1520.231 kb on + strandat 1520.232 kb on - strandat 1520.232 kb on - strandat 1520.633 kb on + strand, within AZOBR_RS21130at 1520.634 kb on - strand, within AZOBR_RS21130at 1522.516 kb on + strand, within AZOBR_RS21135

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,519,473 - -0.6
1,519,516 + -0.3
1,519,516 + +0.5
1,520,017 + -0.5
1,520,018 - +1.1
1,520,085 + -0.7
1,520,112 + +1.1
1,520,113 - +0.5
1,520,113 - +0.7
1,520,231 + -0.4
1,520,232 - -1.0
1,520,232 - -0.8
1,520,633 + AZOBR_RS21130 0.33 -1.0
1,520,634 - AZOBR_RS21130 0.33 -0.8
1,522,516 + AZOBR_RS21135 0.54 -1.0

Or see this region's nucleotide sequence