Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20365

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20360 and AZOBR_RS20365 are separated by 68 nucleotidesAZOBR_RS20365 and AZOBR_RS20370 are separated by 237 nucleotides AZOBR_RS20360: AZOBR_RS20360 - hypothetical protein, at 1,337,101 to 1,337,607 _RS20360 AZOBR_RS20365: AZOBR_RS20365 - hydrogenase expression/formation protein HupF, at 1,337,676 to 1,337,948 _RS20365 AZOBR_RS20370: AZOBR_RS20370 - protein hupE, at 1,338,186 to 1,338,788 _RS20370 Position (kb) 1337 1338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1337.537 kb on + strand, within AZOBR_RS20360at 1338.108 kb on - strandat 1338.108 kb on - strandat 1338.166 kb on + strandat 1338.167 kb on - strandat 1338.167 kb on - strandat 1338.625 kb on - strand, within AZOBR_RS20370at 1338.938 kb on + strandat 1338.938 kb on + strandat 1338.939 kb on - strandat 1338.940 kb on + strandat 1338.940 kb on + strandat 1338.940 kb on + strandat 1338.940 kb on + strandat 1338.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,337,537 + AZOBR_RS20360 0.86 -1.4
1,338,108 - +0.5
1,338,108 - +0.8
1,338,166 + +0.0
1,338,167 - +2.3
1,338,167 - +2.3
1,338,625 - AZOBR_RS20370 0.73 -0.7
1,338,938 + -0.5
1,338,938 + -2.9
1,338,939 - -2.5
1,338,940 + +0.9
1,338,940 + +0.8
1,338,940 + +2.0
1,338,940 + -1.8
1,338,941 - +2.5

Or see this region's nucleotide sequence