Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20275

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20265 and AZOBR_RS20270 are separated by 123 nucleotidesAZOBR_RS20270 and AZOBR_RS20275 are separated by 128 nucleotidesAZOBR_RS20275 and AZOBR_RS20280 are separated by 38 nucleotides AZOBR_RS20265: AZOBR_RS20265 - conserved exported protein of unknown function, at 1,316,901 to 1,317,566 _RS20265 AZOBR_RS20270: AZOBR_RS20270 - hypothetical protein, at 1,317,690 to 1,318,169 _RS20270 AZOBR_RS20275: AZOBR_RS20275 - adenine glycosylase, at 1,318,298 to 1,319,380 _RS20275 AZOBR_RS20280: AZOBR_RS20280 - hypothetical protein, at 1,319,419 to 1,320,180 _RS20280 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -3 -2 -1 0 1at 1317.299 kb on - strand, within AZOBR_RS20265at 1317.368 kb on - strand, within AZOBR_RS20265at 1317.643 kb on + strandat 1317.644 kb on - strandat 1317.692 kb on - strandat 1318.284 kb on + strandat 1318.284 kb on + strandat 1318.284 kb on + strandat 1318.580 kb on + strand, within AZOBR_RS20275at 1318.584 kb on - strand, within AZOBR_RS20275at 1318.604 kb on + strand, within AZOBR_RS20275at 1318.605 kb on - strandat 1318.605 kb on - strand, within AZOBR_RS20275at 1318.694 kb on + strand, within AZOBR_RS20275at 1318.695 kb on - strand, within AZOBR_RS20275at 1318.695 kb on - strand, within AZOBR_RS20275at 1318.696 kb on + strand, within AZOBR_RS20275at 1318.696 kb on + strand, within AZOBR_RS20275at 1318.697 kb on - strand, within AZOBR_RS20275at 1319.378 kb on + strandat 1319.378 kb on + strandat 1319.979 kb on + strand, within AZOBR_RS20280at 1319.980 kb on - strand, within AZOBR_RS20280at 1320.028 kb on + strand, within AZOBR_RS20280

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,317,299 - AZOBR_RS20265 0.60 +1.4
1,317,368 - AZOBR_RS20265 0.70 +0.4
1,317,643 + -1.8
1,317,644 - -0.4
1,317,692 - -0.6
1,318,284 + +0.4
1,318,284 + -0.2
1,318,284 + +1.1
1,318,580 + AZOBR_RS20275 0.26 -2.3
1,318,584 - AZOBR_RS20275 0.26 -1.8
1,318,604 + AZOBR_RS20275 0.28 +0.9
1,318,605 - +0.4
1,318,605 - AZOBR_RS20275 0.28 -3.0
1,318,694 + AZOBR_RS20275 0.37 +0.4
1,318,695 - AZOBR_RS20275 0.37 -1.6
1,318,695 - AZOBR_RS20275 0.37 +0.0
1,318,696 + AZOBR_RS20275 0.37 +0.5
1,318,696 + AZOBR_RS20275 0.37 -1.1
1,318,697 - AZOBR_RS20275 0.37 +0.4
1,319,378 + +0.5
1,319,378 + +0.6
1,319,979 + AZOBR_RS20280 0.73 +0.2
1,319,980 - AZOBR_RS20280 0.74 +0.4
1,320,028 + AZOBR_RS20280 0.80 -0.0

Or see this region's nucleotide sequence