Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19805

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19790 and AZOBR_RS19795 are separated by 92 nucleotidesAZOBR_RS19795 and AZOBR_RS19800 overlap by 41 nucleotidesAZOBR_RS19800 and AZOBR_RS19805 are separated by 3 nucleotidesAZOBR_RS19805 and AZOBR_RS19810 are separated by 43 nucleotidesAZOBR_RS19810 and AZOBR_RS19815 are separated by 169 nucleotides AZOBR_RS19790: AZOBR_RS19790 - amino acid ABC transporter ATPase, at 1,209,552 to 1,210,256 _RS19790 AZOBR_RS19795: AZOBR_RS19795 - MerR family transcriptional regulator, at 1,210,349 to 1,210,753 _RS19795 AZOBR_RS19800: AZOBR_RS19800 - 4-carboxymuconolactone decarboxylase, at 1,210,713 to 1,211,132 _RS19800 AZOBR_RS19805: AZOBR_RS19805 - acetyltransferase, at 1,211,136 to 1,211,414 _RS19805 AZOBR_RS19810: AZOBR_RS19810 - membrane protein, at 1,211,458 to 1,212,090 _RS19810 AZOBR_RS19815: AZOBR_RS19815 - quercetin 2 3-dioxygenase, at 1,212,260 to 1,212,958 _RS19815 Position (kb) 1211 1212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1210.164 kb on + strand, within AZOBR_RS19790at 1210.164 kb on + strand, within AZOBR_RS19790at 1210.165 kb on - strand, within AZOBR_RS19790at 1210.165 kb on - strand, within AZOBR_RS19790at 1210.165 kb on - strand, within AZOBR_RS19790at 1210.165 kb on - strand, within AZOBR_RS19790at 1210.242 kb on + strandat 1210.294 kb on + strandat 1210.406 kb on + strand, within AZOBR_RS19795at 1210.406 kb on + strand, within AZOBR_RS19795at 1210.406 kb on + strand, within AZOBR_RS19795at 1210.407 kb on - strand, within AZOBR_RS19795at 1210.407 kb on - strand, within AZOBR_RS19795at 1210.407 kb on - strand, within AZOBR_RS19795at 1210.463 kb on + strand, within AZOBR_RS19795at 1210.683 kb on - strand, within AZOBR_RS19795at 1210.683 kb on - strand, within AZOBR_RS19795at 1210.683 kb on - strand, within AZOBR_RS19795at 1210.800 kb on - strand, within AZOBR_RS19800at 1210.800 kb on - strand, within AZOBR_RS19800at 1210.845 kb on + strand, within AZOBR_RS19800at 1210.845 kb on + strand, within AZOBR_RS19800at 1210.845 kb on + strandat 1210.846 kb on - strand, within AZOBR_RS19800at 1210.846 kb on - strand, within AZOBR_RS19800at 1210.875 kb on + strand, within AZOBR_RS19800at 1210.875 kb on + strand, within AZOBR_RS19800at 1210.876 kb on - strand, within AZOBR_RS19800at 1210.876 kb on - strand, within AZOBR_RS19800at 1210.876 kb on - strand, within AZOBR_RS19800at 1211.040 kb on + strand, within AZOBR_RS19800at 1211.040 kb on + strand, within AZOBR_RS19800at 1211.040 kb on + strand, within AZOBR_RS19800at 1211.041 kb on - strand, within AZOBR_RS19800at 1211.137 kb on + strandat 1211.138 kb on - strandat 1211.192 kb on - strand, within AZOBR_RS19805at 1211.302 kb on + strand, within AZOBR_RS19805at 1211.303 kb on - strand, within AZOBR_RS19805at 1211.335 kb on + strand, within AZOBR_RS19805at 1211.618 kb on + strand, within AZOBR_RS19810at 1211.732 kb on + strand, within AZOBR_RS19810at 1212.132 kb on - strandat 1212.344 kb on + strand, within AZOBR_RS19815at 1212.344 kb on + strand, within AZOBR_RS19815at 1212.345 kb on - strand, within AZOBR_RS19815at 1212.347 kb on + strand, within AZOBR_RS19815at 1212.348 kb on - strand, within AZOBR_RS19815at 1212.348 kb on - strand, within AZOBR_RS19815at 1212.348 kb on - strand, within AZOBR_RS19815at 1212.348 kb on - strand, within AZOBR_RS19815

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,210,164 + AZOBR_RS19790 0.87 -0.3
1,210,164 + AZOBR_RS19790 0.87 +1.0
1,210,165 - AZOBR_RS19790 0.87 -1.1
1,210,165 - AZOBR_RS19790 0.87 +0.5
1,210,165 - AZOBR_RS19790 0.87 +2.0
1,210,165 - AZOBR_RS19790 0.87 -1.8
1,210,242 + +0.7
1,210,294 + -2.2
1,210,406 + AZOBR_RS19795 0.14 +1.2
1,210,406 + AZOBR_RS19795 0.14 -1.1
1,210,406 + AZOBR_RS19795 0.14 +0.7
1,210,407 - AZOBR_RS19795 0.14 -0.3
1,210,407 - AZOBR_RS19795 0.14 -1.8
1,210,407 - AZOBR_RS19795 0.14 -0.3
1,210,463 + AZOBR_RS19795 0.28 +1.2
1,210,683 - AZOBR_RS19795 0.82 +0.2
1,210,683 - AZOBR_RS19795 0.82 +0.5
1,210,683 - AZOBR_RS19795 0.82 +0.8
1,210,800 - AZOBR_RS19800 0.21 +0.2
1,210,800 - AZOBR_RS19800 0.21 +0.5
1,210,845 + AZOBR_RS19800 0.31 -2.3
1,210,845 + AZOBR_RS19800 0.31 +0.9
1,210,845 + +1.2
1,210,846 - AZOBR_RS19800 0.32 +1.1
1,210,846 - AZOBR_RS19800 0.32 -2.8
1,210,875 + AZOBR_RS19800 0.39 +0.2
1,210,875 + AZOBR_RS19800 0.39 +2.5
1,210,876 - AZOBR_RS19800 0.39 +0.5
1,210,876 - AZOBR_RS19800 0.39 +1.5
1,210,876 - AZOBR_RS19800 0.39 +0.7
1,211,040 + AZOBR_RS19800 0.78 +0.7
1,211,040 + AZOBR_RS19800 0.78 +1.2
1,211,040 + AZOBR_RS19800 0.78 -0.4
1,211,041 - AZOBR_RS19800 0.78 -0.2
1,211,137 + +0.5
1,211,138 - +0.1
1,211,192 - AZOBR_RS19805 0.20 +1.0
1,211,302 + AZOBR_RS19805 0.59 +0.6
1,211,303 - AZOBR_RS19805 0.60 +0.6
1,211,335 + AZOBR_RS19805 0.71 -0.7
1,211,618 + AZOBR_RS19810 0.25 +0.0
1,211,732 + AZOBR_RS19810 0.43 -0.9
1,212,132 - -0.9
1,212,344 + AZOBR_RS19815 0.12 -0.6
1,212,344 + AZOBR_RS19815 0.12 +1.7
1,212,345 - AZOBR_RS19815 0.12 +1.2
1,212,347 + AZOBR_RS19815 0.12 +0.7
1,212,348 - AZOBR_RS19815 0.13 -0.3
1,212,348 - AZOBR_RS19815 0.13 -0.1
1,212,348 - AZOBR_RS19815 0.13 -1.5
1,212,348 - AZOBR_RS19815 0.13 -0.9

Or see this region's nucleotide sequence