Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19330

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19325 and AZOBR_RS19330 overlap by 4 nucleotidesAZOBR_RS19330 and AZOBR_RS19335 are separated by 159 nucleotides AZOBR_RS19325: AZOBR_RS19325 - hypothetical protein, at 1,104,284 to 1,105,390 _RS19325 AZOBR_RS19330: AZOBR_RS19330 - NAD synthetase, at 1,105,387 to 1,106,394 _RS19330 AZOBR_RS19335: AZOBR_RS19335 - asparagine synthase, at 1,106,554 to 1,108,506 _RS19335 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -2 -1 0 1at 1104.627 kb on + strand, within AZOBR_RS19325at 1104.627 kb on + strand, within AZOBR_RS19325at 1104.627 kb on + strand, within AZOBR_RS19325at 1104.627 kb on + strand, within AZOBR_RS19325at 1104.627 kb on + strand, within AZOBR_RS19325at 1104.628 kb on - strand, within AZOBR_RS19325at 1104.628 kb on - strand, within AZOBR_RS19325at 1104.628 kb on - strand, within AZOBR_RS19325at 1104.907 kb on - strand, within AZOBR_RS19325at 1104.951 kb on + strand, within AZOBR_RS19325at 1104.993 kb on + strand, within AZOBR_RS19325at 1105.002 kb on + strand, within AZOBR_RS19325at 1105.595 kb on + strand, within AZOBR_RS19330at 1105.596 kb on - strand, within AZOBR_RS19330at 1105.596 kb on - strand, within AZOBR_RS19330at 1105.598 kb on + strand, within AZOBR_RS19330at 1105.598 kb on + strand, within AZOBR_RS19330at 1105.599 kb on - strand, within AZOBR_RS19330at 1105.599 kb on - strand, within AZOBR_RS19330at 1105.599 kb on - strand, within AZOBR_RS19330at 1105.628 kb on + strand, within AZOBR_RS19330at 1105.628 kb on + strand, within AZOBR_RS19330at 1105.628 kb on + strand, within AZOBR_RS19330at 1105.695 kb on - strand, within AZOBR_RS19330at 1105.775 kb on + strand, within AZOBR_RS19330at 1105.776 kb on - strand, within AZOBR_RS19330at 1105.776 kb on - strand, within AZOBR_RS19330at 1105.776 kb on - strand, within AZOBR_RS19330at 1105.808 kb on + strand, within AZOBR_RS19330at 1105.809 kb on - strand, within AZOBR_RS19330at 1105.832 kb on + strand, within AZOBR_RS19330at 1105.833 kb on - strand, within AZOBR_RS19330at 1105.833 kb on - strand, within AZOBR_RS19330at 1105.833 kb on - strand, within AZOBR_RS19330at 1105.889 kb on + strand, within AZOBR_RS19330at 1105.889 kb on + strand, within AZOBR_RS19330at 1105.890 kb on - strandat 1105.890 kb on - strand, within AZOBR_RS19330at 1105.890 kb on - strand, within AZOBR_RS19330at 1105.890 kb on - strand, within AZOBR_RS19330at 1105.955 kb on + strand, within AZOBR_RS19330at 1105.956 kb on - strand, within AZOBR_RS19330at 1105.956 kb on - strand, within AZOBR_RS19330at 1106.021 kb on + strand, within AZOBR_RS19330at 1106.063 kb on + strand, within AZOBR_RS19330at 1106.063 kb on + strand, within AZOBR_RS19330at 1106.063 kb on + strand, within AZOBR_RS19330at 1106.064 kb on - strand, within AZOBR_RS19330at 1106.064 kb on - strand, within AZOBR_RS19330at 1106.762 kb on + strand, within AZOBR_RS19335at 1106.763 kb on - strand, within AZOBR_RS19335at 1106.763 kb on - strand, within AZOBR_RS19335at 1107.014 kb on + strand, within AZOBR_RS19335at 1107.015 kb on - strand, within AZOBR_RS19335at 1107.200 kb on + strand, within AZOBR_RS19335at 1107.200 kb on + strand, within AZOBR_RS19335at 1107.201 kb on - strand, within AZOBR_RS19335at 1107.201 kb on - strand, within AZOBR_RS19335at 1107.285 kb on - strand, within AZOBR_RS19335

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,104,627 + AZOBR_RS19325 0.31 +0.1
1,104,627 + AZOBR_RS19325 0.31 +0.1
1,104,627 + AZOBR_RS19325 0.31 -0.0
1,104,627 + AZOBR_RS19325 0.31 -0.2
1,104,627 + AZOBR_RS19325 0.31 -2.7
1,104,628 - AZOBR_RS19325 0.31 -0.2
1,104,628 - AZOBR_RS19325 0.31 -0.5
1,104,628 - AZOBR_RS19325 0.31 -0.3
1,104,907 - AZOBR_RS19325 0.56 -0.6
1,104,951 + AZOBR_RS19325 0.60 -1.0
1,104,993 + AZOBR_RS19325 0.64 -0.3
1,105,002 + AZOBR_RS19325 0.65 -0.1
1,105,595 + AZOBR_RS19330 0.21 -0.2
1,105,596 - AZOBR_RS19330 0.21 +0.4
1,105,596 - AZOBR_RS19330 0.21 +1.3
1,105,598 + AZOBR_RS19330 0.21 -0.9
1,105,598 + AZOBR_RS19330 0.21 -0.1
1,105,599 - AZOBR_RS19330 0.21 -0.2
1,105,599 - AZOBR_RS19330 0.21 -1.3
1,105,599 - AZOBR_RS19330 0.21 +0.2
1,105,628 + AZOBR_RS19330 0.24 +0.7
1,105,628 + AZOBR_RS19330 0.24 -1.1
1,105,628 + AZOBR_RS19330 0.24 -0.6
1,105,695 - AZOBR_RS19330 0.31 -0.0
1,105,775 + AZOBR_RS19330 0.38 +0.6
1,105,776 - AZOBR_RS19330 0.39 -0.2
1,105,776 - AZOBR_RS19330 0.39 +0.1
1,105,776 - AZOBR_RS19330 0.39 -1.1
1,105,808 + AZOBR_RS19330 0.42 +0.5
1,105,809 - AZOBR_RS19330 0.42 +1.0
1,105,832 + AZOBR_RS19330 0.44 +0.4
1,105,833 - AZOBR_RS19330 0.44 +0.1
1,105,833 - AZOBR_RS19330 0.44 -0.5
1,105,833 - AZOBR_RS19330 0.44 -0.4
1,105,889 + AZOBR_RS19330 0.50 +0.4
1,105,889 + AZOBR_RS19330 0.50 -0.7
1,105,890 - -0.1
1,105,890 - AZOBR_RS19330 0.50 +0.6
1,105,890 - AZOBR_RS19330 0.50 +1.6
1,105,890 - AZOBR_RS19330 0.50 -2.7
1,105,955 + AZOBR_RS19330 0.56 +0.3
1,105,956 - AZOBR_RS19330 0.56 +0.5
1,105,956 - AZOBR_RS19330 0.56 +1.0
1,106,021 + AZOBR_RS19330 0.63 +0.7
1,106,063 + AZOBR_RS19330 0.67 +0.3
1,106,063 + AZOBR_RS19330 0.67 +0.1
1,106,063 + AZOBR_RS19330 0.67 +0.4
1,106,064 - AZOBR_RS19330 0.67 -2.0
1,106,064 - AZOBR_RS19330 0.67 +0.5
1,106,762 + AZOBR_RS19335 0.11 +0.3
1,106,763 - AZOBR_RS19335 0.11 -0.7
1,106,763 - AZOBR_RS19335 0.11 -0.4
1,107,014 + AZOBR_RS19335 0.24 -0.7
1,107,015 - AZOBR_RS19335 0.24 -0.3
1,107,200 + AZOBR_RS19335 0.33 -1.2
1,107,200 + AZOBR_RS19335 0.33 -1.7
1,107,201 - AZOBR_RS19335 0.33 -0.4
1,107,201 - AZOBR_RS19335 0.33 +0.4
1,107,285 - AZOBR_RS19335 0.37 -0.1

Or see this region's nucleotide sequence