Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18195

Experiment: 3-octanone 6.3476 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS18190 and AZOBR_RS18195 overlap by 4 nucleotidesAZOBR_RS18195 and AZOBR_RS18200 are separated by 100 nucleotides AZOBR_RS18190: AZOBR_RS18190 - hypothetical protein, at 839,592 to 840,293 _RS18190 AZOBR_RS18195: AZOBR_RS18195 - hypothetical protein, at 840,290 to 843,593 _RS18195 AZOBR_RS18200: AZOBR_RS18200 - hypothetical protein, at 843,694 to 846,412 _RS18200 Position (kb) 840 841 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 839.381 kb on - strandat 839.427 kb on + strandat 839.591 kb on + strandat 841.727 kb on + strand, within AZOBR_RS18195at 841.727 kb on + strand, within AZOBR_RS18195at 842.437 kb on + strand, within AZOBR_RS18195at 842.438 kb on - strand, within AZOBR_RS18195at 842.438 kb on - strand, within AZOBR_RS18195at 842.666 kb on + strand, within AZOBR_RS18195at 842.666 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.880 kb on - strand, within AZOBR_RS18195at 843.342 kb on - strandat 843.342 kb on - strandat 844.058 kb on + strand, within AZOBR_RS18200at 844.059 kb on - strand, within AZOBR_RS18200at 844.581 kb on - strand, within AZOBR_RS18200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
remove
839,381 - -3.0
839,427 + -0.5
839,591 + +0.7
841,727 + AZOBR_RS18195 0.43 -3.2
841,727 + AZOBR_RS18195 0.43 +0.3
842,437 + AZOBR_RS18195 0.65 +0.6
842,438 - AZOBR_RS18195 0.65 -0.0
842,438 - AZOBR_RS18195 0.65 -0.5
842,666 + AZOBR_RS18195 0.72 +3.5
842,666 + AZOBR_RS18195 0.72 -2.2
842,879 + AZOBR_RS18195 0.78 +0.0
842,879 + AZOBR_RS18195 0.78 +0.8
842,879 + AZOBR_RS18195 0.78 -1.2
842,879 + AZOBR_RS18195 0.78 -2.0
842,879 + AZOBR_RS18195 0.78 +0.3
842,879 + AZOBR_RS18195 0.78 -1.7
842,880 - AZOBR_RS18195 0.78 -0.7
843,342 - -1.7
843,342 - -0.4
844,058 + AZOBR_RS18200 0.13 -1.6
844,059 - AZOBR_RS18200 0.13 +1.0
844,581 - AZOBR_RS18200 0.33 -1.5

Or see this region's nucleotide sequence