Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10800

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10795 and AZOBR_RS10800 are separated by 19 nucleotides AZOBR_RS10795: AZOBR_RS10795 - histidine kinase, at 2,271,446 to 2,272,843 _RS10795 AZOBR_RS10800: AZOBR_RS10800 - XRE family transcriptional regulator, at 2,272,863 to 2,273,540 _RS10800 Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2272.474 kb on - strand, within AZOBR_RS10795at 2272.474 kb on - strand, within AZOBR_RS10795at 2272.578 kb on + strand, within AZOBR_RS10795at 2272.578 kb on + strand, within AZOBR_RS10795at 2272.579 kb on - strand, within AZOBR_RS10795at 2272.600 kb on - strand, within AZOBR_RS10795at 2272.731 kb on + strandat 2272.731 kb on + strandat 2272.779 kb on + strandat 2272.780 kb on - strandat 2272.780 kb on - strandat 2272.780 kb on - strandat 2272.780 kb on - strandat 2272.780 kb on - strandat 2272.996 kb on + strand, within AZOBR_RS10800at 2273.059 kb on + strand, within AZOBR_RS10800at 2273.059 kb on + strand, within AZOBR_RS10800at 2273.059 kb on + strand, within AZOBR_RS10800at 2273.248 kb on + strand, within AZOBR_RS10800at 2273.407 kb on + strand, within AZOBR_RS10800at 2273.553 kb on - strandat 2273.553 kb on - strandat 2273.710 kb on + strandat 2274.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,272,474 - AZOBR_RS10795 0.74 +0.8
2,272,474 - AZOBR_RS10795 0.74 -1.3
2,272,578 + AZOBR_RS10795 0.81 -2.0
2,272,578 + AZOBR_RS10795 0.81 -0.7
2,272,579 - AZOBR_RS10795 0.81 -0.2
2,272,600 - AZOBR_RS10795 0.83 +0.8
2,272,731 + +1.4
2,272,731 + +1.8
2,272,779 + -0.4
2,272,780 - +0.8
2,272,780 - +0.8
2,272,780 - +2.4
2,272,780 - +0.1
2,272,780 - -1.7
2,272,996 + AZOBR_RS10800 0.20 -0.7
2,273,059 + AZOBR_RS10800 0.29 +0.6
2,273,059 + AZOBR_RS10800 0.29 -2.6
2,273,059 + AZOBR_RS10800 0.29 -1.2
2,273,248 + AZOBR_RS10800 0.57 -1.5
2,273,407 + AZOBR_RS10800 0.80 -3.7
2,273,553 - +0.5
2,273,553 - +1.8
2,273,710 + -1.7
2,274,460 - +3.2

Or see this region's nucleotide sequence