Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09950

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09940 and AZOBR_RS09945 are separated by 109 nucleotidesAZOBR_RS09945 and AZOBR_RS09950 are separated by 109 nucleotidesAZOBR_RS09950 and AZOBR_RS09955 are separated by 107 nucleotides AZOBR_RS09940: AZOBR_RS09940 - 5'-methylthioadenosine phosphorylase, at 2,087,326 to 2,088,210 _RS09940 AZOBR_RS09945: AZOBR_RS09945 - hypothetical protein, at 2,088,320 to 2,088,733 _RS09945 AZOBR_RS09950: AZOBR_RS09950 - pseudouridine-5'-phosphate glycosidase, at 2,088,843 to 2,089,763 _RS09950 AZOBR_RS09955: AZOBR_RS09955 - beta-lactamase, at 2,089,871 to 2,090,899 _RS09955 Position (kb) 2088 2089 2090Strain fitness (log2 ratio) -2 -1 0 1at 2088.348 kb on + strandat 2088.813 kb on + strandat 2088.821 kb on - strandat 2088.835 kb on - strandat 2088.863 kb on - strandat 2089.193 kb on - strand, within AZOBR_RS09950at 2089.451 kb on + strand, within AZOBR_RS09950at 2089.517 kb on + strand, within AZOBR_RS09950at 2089.517 kb on + strand, within AZOBR_RS09950at 2089.518 kb on - strand, within AZOBR_RS09950at 2089.859 kb on - strandat 2089.859 kb on - strandat 2089.859 kb on - strandat 2089.861 kb on - strandat 2089.937 kb on + strandat 2089.959 kb on - strandat 2089.959 kb on - strandat 2090.121 kb on - strand, within AZOBR_RS09955at 2090.241 kb on - strand, within AZOBR_RS09955at 2090.418 kb on - strand, within AZOBR_RS09955at 2090.484 kb on - strand, within AZOBR_RS09955at 2090.484 kb on - strand, within AZOBR_RS09955at 2090.519 kb on + strand, within AZOBR_RS09955at 2090.520 kb on - strand, within AZOBR_RS09955at 2090.520 kb on - strand, within AZOBR_RS09955at 2090.520 kb on - strand, within AZOBR_RS09955at 2090.520 kb on - strand, within AZOBR_RS09955at 2090.520 kb on - strand, within AZOBR_RS09955

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,088,348 + -0.9
2,088,813 + -1.1
2,088,821 - -0.7
2,088,835 - +1.6
2,088,863 - -0.1
2,089,193 - AZOBR_RS09950 0.38 +0.2
2,089,451 + AZOBR_RS09950 0.66 -0.5
2,089,517 + AZOBR_RS09950 0.73 +0.7
2,089,517 + AZOBR_RS09950 0.73 +0.1
2,089,518 - AZOBR_RS09950 0.73 +0.1
2,089,859 - -2.3
2,089,859 - +1.2
2,089,859 - -0.2
2,089,861 - +0.5
2,089,937 + +1.3
2,089,959 - +0.0
2,089,959 - +0.3
2,090,121 - AZOBR_RS09955 0.24 -1.6
2,090,241 - AZOBR_RS09955 0.36 +0.5
2,090,418 - AZOBR_RS09955 0.53 -0.1
2,090,484 - AZOBR_RS09955 0.60 -0.1
2,090,484 - AZOBR_RS09955 0.60 +0.7
2,090,519 + AZOBR_RS09955 0.63 -1.0
2,090,520 - AZOBR_RS09955 0.63 +1.2
2,090,520 - AZOBR_RS09955 0.63 +0.4
2,090,520 - AZOBR_RS09955 0.63 +0.2
2,090,520 - AZOBR_RS09955 0.63 +0.8
2,090,520 - AZOBR_RS09955 0.63 +0.3

Or see this region's nucleotide sequence