Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08440

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08435 and AZOBR_RS08440 are separated by 65 nucleotidesAZOBR_RS08440 and AZOBR_RS08445 are separated by 91 nucleotides AZOBR_RS08435: AZOBR_RS08435 - transcriptional regulator, at 1,771,473 to 1,772,339 _RS08435 AZOBR_RS08440: AZOBR_RS08440 - kinase inhibitor, at 1,772,405 to 1,772,956 _RS08440 AZOBR_RS08445: AZOBR_RS08445 - delta-aminolevulinic acid dehydratase, at 1,773,048 to 1,774,061 _RS08445 Position (kb) 1772 1773Strain fitness (log2 ratio) -3 -2 -1 0 1at 1771.470 kb on + strandat 1771.555 kb on + strandat 1772.050 kb on + strand, within AZOBR_RS08435at 1772.202 kb on + strand, within AZOBR_RS08435at 1772.202 kb on + strand, within AZOBR_RS08435at 1772.203 kb on - strand, within AZOBR_RS08435at 1772.354 kb on + strandat 1772.355 kb on - strandat 1772.460 kb on - strandat 1772.538 kb on + strand, within AZOBR_RS08440at 1772.538 kb on + strand, within AZOBR_RS08440at 1772.538 kb on + strand, within AZOBR_RS08440at 1772.993 kb on + strandat 1772.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,771,470 + +1.2
1,771,555 + +0.2
1,772,050 + AZOBR_RS08435 0.67 +0.2
1,772,202 + AZOBR_RS08435 0.84 +1.6
1,772,202 + AZOBR_RS08435 0.84 -1.3
1,772,203 - AZOBR_RS08435 0.84 +0.4
1,772,354 + -0.8
1,772,355 - -1.7
1,772,460 - +0.0
1,772,538 + AZOBR_RS08440 0.24 -0.6
1,772,538 + AZOBR_RS08440 0.24 -2.9
1,772,538 + AZOBR_RS08440 0.24 -0.0
1,772,993 + +0.9
1,772,994 - -0.1

Or see this region's nucleotide sequence