Experiment: 3-octanone 6.3476 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08055 and AZOBR_RS08060 are separated by 100 nucleotides AZOBR_RS08060 and AZOBR_RS08065 are separated by 11 nucleotides AZOBR_RS08065 and AZOBR_RS08070 are separated by 26 nucleotides
AZOBR_RS08055: AZOBR_RS08055 - urease accessory protein, at 1,700,372 to 1,701,199
_RS08055
AZOBR_RS08060: AZOBR_RS08060 - urease subunit gamma, at 1,701,300 to 1,701,602
_RS08060
AZOBR_RS08065: AZOBR_RS08065 - urease subunit beta, at 1,701,614 to 1,701,919
_RS08065
AZOBR_RS08070: AZOBR_RS08070 - urease subunit alpha, at 1,701,946 to 1,703,655
_RS08070
Position (kb)
1700
1701
1702 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1699.376 kb on - strand at 1699.428 kb on + strand at 1699.760 kb on - strand at 1699.817 kb on - strand at 1699.874 kb on - strand at 1700.041 kb on + strand at 1700.041 kb on + strand at 1700.041 kb on + strand at 1700.042 kb on - strand at 1700.042 kb on - strand at 1700.092 kb on + strand at 1700.092 kb on + strand at 1700.318 kb on + strand at 1700.318 kb on + strand at 1700.318 kb on + strand at 1700.319 kb on - strand at 1700.451 kb on - strand at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1700.975 kb on + strand, within AZOBR_RS08055 at 1701.122 kb on + strand at 1701.260 kb on + strand at 1701.261 kb on - strand at 1701.424 kb on - strand, within AZOBR_RS08060 at 1701.424 kb on - strand, within AZOBR_RS08060 at 1701.732 kb on - strand, within AZOBR_RS08065 at 1701.732 kb on - strand, within AZOBR_RS08065 at 1701.864 kb on - strand, within AZOBR_RS08065 at 1701.864 kb on - strand, within AZOBR_RS08065 at 1701.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM remove 1,699,376 - +0.9 1,699,428 + +0.5 1,699,760 - -2.0 1,699,817 - -1.5 1,699,874 - -0.2 1,700,041 + -0.4 1,700,041 + +0.6 1,700,041 + -0.1 1,700,042 - -0.5 1,700,042 - +0.3 1,700,092 + -0.7 1,700,092 + +1.0 1,700,318 + +0.1 1,700,318 + -0.1 1,700,318 + +0.6 1,700,319 - +0.3 1,700,451 - +0.7 1,700,975 + AZOBR_RS08055 0.73 -1.6 1,700,975 + AZOBR_RS08055 0.73 +0.8 1,700,975 + AZOBR_RS08055 0.73 -1.9 1,700,975 + AZOBR_RS08055 0.73 -0.7 1,701,122 + +1.1 1,701,260 + -1.1 1,701,261 - +0.2 1,701,424 - AZOBR_RS08060 0.41 -1.6 1,701,424 - AZOBR_RS08060 0.41 -0.1 1,701,732 - AZOBR_RS08065 0.39 -0.3 1,701,732 - AZOBR_RS08065 0.39 +0.5 1,701,864 - AZOBR_RS08065 0.82 -1.8 1,701,864 - AZOBR_RS08065 0.82 +3.0 1,701,986 - -0.6
Or see this region's nucleotide sequence