Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03320

Experiment: 3-octanone 6.3476 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03310 and AZOBR_RS03315 are separated by 5 nucleotidesAZOBR_RS03315 and AZOBR_RS03320 are separated by 230 nucleotidesAZOBR_RS03320 and AZOBR_RS03325 are separated by 99 nucleotides AZOBR_RS03310: AZOBR_RS03310 - ribonuclease P, at 700,840 to 701,211 _RS03310 AZOBR_RS03315: AZOBR_RS03315 - 50S ribosomal protein L34, at 701,217 to 701,351 _RS03315 AZOBR_RS03320: AZOBR_RS03320 - hypothetical protein, at 701,582 to 703,084 _RS03320 AZOBR_RS03325: AZOBR_RS03325 - hypothetical protein, at 703,184 to 704,041 _RS03325 Position (kb) 701 702 703 704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 700.607 kb on - strandat 701.904 kb on - strand, within AZOBR_RS03320at 702.021 kb on - strand, within AZOBR_RS03320at 702.170 kb on + strand, within AZOBR_RS03320at 702.279 kb on - strand, within AZOBR_RS03320at 702.590 kb on + strand, within AZOBR_RS03320at 702.590 kb on + strand, within AZOBR_RS03320at 702.590 kb on - strand, within AZOBR_RS03320at 702.591 kb on - strand, within AZOBR_RS03320at 702.591 kb on - strand, within AZOBR_RS03320at 702.591 kb on - strand, within AZOBR_RS03320at 702.674 kb on + strand, within AZOBR_RS03320at 702.675 kb on - strand, within AZOBR_RS03320at 702.675 kb on - strand, within AZOBR_RS03320at 702.779 kb on + strand, within AZOBR_RS03320at 702.779 kb on + strand, within AZOBR_RS03320at 703.425 kb on + strand, within AZOBR_RS03325at 703.426 kb on - strand, within AZOBR_RS03325at 703.426 kb on - strand, within AZOBR_RS03325at 703.474 kb on - strand, within AZOBR_RS03325at 703.474 kb on - strand, within AZOBR_RS03325at 703.474 kb on - strand, within AZOBR_RS03325at 703.572 kb on + strand, within AZOBR_RS03325at 703.572 kb on + strand, within AZOBR_RS03325at 703.572 kb on + strand, within AZOBR_RS03325at 703.573 kb on - strand, within AZOBR_RS03325at 703.573 kb on - strand, within AZOBR_RS03325at 703.573 kb on - strand, within AZOBR_RS03325at 703.573 kb on - strand, within AZOBR_RS03325at 703.627 kb on - strand, within AZOBR_RS03325at 703.627 kb on - strand, within AZOBR_RS03325at 703.731 kb on + strand, within AZOBR_RS03325at 703.731 kb on + strand, within AZOBR_RS03325at 703.731 kb on + strand, within AZOBR_RS03325at 703.731 kb on + strand, within AZOBR_RS03325at 703.731 kb on + strand, within AZOBR_RS03325at 703.731 kb on + strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.732 kb on - strand, within AZOBR_RS03325at 703.797 kb on + strand, within AZOBR_RS03325at 703.797 kb on + strand, within AZOBR_RS03325at 703.797 kb on + strand, within AZOBR_RS03325at 703.798 kb on - strand, within AZOBR_RS03325at 703.798 kb on - strand, within AZOBR_RS03325at 703.836 kb on + strand, within AZOBR_RS03325at 703.837 kb on - strand, within AZOBR_RS03325at 703.869 kb on + strand, within AZOBR_RS03325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
remove
700,607 - +0.7
701,904 - AZOBR_RS03320 0.21 +1.4
702,021 - AZOBR_RS03320 0.29 +0.4
702,170 + AZOBR_RS03320 0.39 -0.7
702,279 - AZOBR_RS03320 0.46 -2.1
702,590 + AZOBR_RS03320 0.67 +1.5
702,590 + AZOBR_RS03320 0.67 -1.4
702,590 - AZOBR_RS03320 0.67 +0.4
702,591 - AZOBR_RS03320 0.67 -0.2
702,591 - AZOBR_RS03320 0.67 -0.8
702,591 - AZOBR_RS03320 0.67 +1.5
702,674 + AZOBR_RS03320 0.73 -0.4
702,675 - AZOBR_RS03320 0.73 +0.4
702,675 - AZOBR_RS03320 0.73 -0.3
702,779 + AZOBR_RS03320 0.80 +0.6
702,779 + AZOBR_RS03320 0.80 +0.4
703,425 + AZOBR_RS03325 0.28 -1.1
703,426 - AZOBR_RS03325 0.28 -1.0
703,426 - AZOBR_RS03325 0.28 +0.4
703,474 - AZOBR_RS03325 0.34 -0.5
703,474 - AZOBR_RS03325 0.34 +0.0
703,474 - AZOBR_RS03325 0.34 +0.2
703,572 + AZOBR_RS03325 0.45 +0.6
703,572 + AZOBR_RS03325 0.45 -0.7
703,572 + AZOBR_RS03325 0.45 +1.4
703,573 - AZOBR_RS03325 0.45 -0.2
703,573 - AZOBR_RS03325 0.45 +0.7
703,573 - AZOBR_RS03325 0.45 +0.9
703,573 - AZOBR_RS03325 0.45 -3.0
703,627 - AZOBR_RS03325 0.52 +1.4
703,627 - AZOBR_RS03325 0.52 -2.5
703,731 + AZOBR_RS03325 0.64 +0.9
703,731 + AZOBR_RS03325 0.64 -0.9
703,731 + AZOBR_RS03325 0.64 -0.1
703,731 + AZOBR_RS03325 0.64 +0.0
703,731 + AZOBR_RS03325 0.64 -0.0
703,731 + AZOBR_RS03325 0.64 -1.1
703,732 - AZOBR_RS03325 0.64 +0.1
703,732 - AZOBR_RS03325 0.64 -3.2
703,732 - AZOBR_RS03325 0.64 -0.7
703,732 - AZOBR_RS03325 0.64 -4.0
703,732 - AZOBR_RS03325 0.64 +0.1
703,732 - AZOBR_RS03325 0.64 -0.1
703,732 - AZOBR_RS03325 0.64 +0.3
703,732 - AZOBR_RS03325 0.64 -0.0
703,797 + AZOBR_RS03325 0.71 -1.2
703,797 + AZOBR_RS03325 0.71 -1.5
703,797 + AZOBR_RS03325 0.71 -3.1
703,798 - AZOBR_RS03325 0.72 +0.3
703,798 - AZOBR_RS03325 0.72 +0.2
703,836 + AZOBR_RS03325 0.76 +0.2
703,837 - AZOBR_RS03325 0.76 +0.5
703,869 + AZOBR_RS03325 0.80 -0.5

Or see this region's nucleotide sequence