Experiment: 3-octanone 6.3476 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17000 and AZOBR_RS17005 are separated by 298 nucleotides AZOBR_RS17005 and AZOBR_RS17010 overlap by 60 nucleotides AZOBR_RS17010 and AZOBR_RS17015 are separated by 169 nucleotides AZOBR_RS17015 and AZOBR_RS17020 are separated by 9 nucleotides
AZOBR_RS17000: AZOBR_RS17000 - 1-deoxy-D-xylulose-5-phosphate synthase, at 568,540 to 570,471
_RS17000
AZOBR_RS17005: AZOBR_RS17005 - radical SAM protein, at 570,770 to 571,897
_RS17005
AZOBR_RS17010: AZOBR_RS17010 - hypothetical protein, at 571,838 to 572,107
_RS17010
AZOBR_RS17015: AZOBR_RS17015 - hypothetical protein, at 572,277 to 572,663
_RS17015
AZOBR_RS17020: AZOBR_RS17020 - hypothetical protein, at 572,673 to 573,068
_RS17020
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1 at 569.883 kb on - strand, within AZOBR_RS17000 at 569.985 kb on - strand, within AZOBR_RS17000 at 570.122 kb on + strand, within AZOBR_RS17000 at 570.122 kb on + strand, within AZOBR_RS17000 at 570.135 kb on + strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.219 kb on - strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.491 kb on - strand at 570.502 kb on + strand at 570.503 kb on - strand at 570.503 kb on - strand at 570.503 kb on - strand at 570.610 kb on + strand at 570.611 kb on - strand at 570.611 kb on - strand at 570.615 kb on + strand at 570.615 kb on + strand at 570.616 kb on - strand at 570.620 kb on + strand at 570.620 kb on + strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.626 kb on - strand at 570.809 kb on + strand at 570.809 kb on + strand at 570.810 kb on - strand at 570.810 kb on - strand at 570.917 kb on + strand, within AZOBR_RS17005 at 571.079 kb on + strand, within AZOBR_RS17005 at 571.079 kb on + strand, within AZOBR_RS17005 at 571.211 kb on + strand, within AZOBR_RS17005 at 571.211 kb on + strand, within AZOBR_RS17005 at 571.370 kb on + strand, within AZOBR_RS17005 at 571.376 kb on + strand, within AZOBR_RS17005 at 571.523 kb on + strand, within AZOBR_RS17005 at 571.523 kb on + strand, within AZOBR_RS17005 at 571.524 kb on - strand, within AZOBR_RS17005 at 571.583 kb on + strand, within AZOBR_RS17005 at 571.584 kb on - strand, within AZOBR_RS17005 at 571.584 kb on - strand, within AZOBR_RS17005 at 571.649 kb on + strand, within AZOBR_RS17005 at 571.650 kb on - strand, within AZOBR_RS17005 at 571.664 kb on + strand, within AZOBR_RS17005 at 571.665 kb on - strand, within AZOBR_RS17005 at 571.665 kb on - strand, within AZOBR_RS17005 at 572.432 kb on - strand, within AZOBR_RS17015 at 572.857 kb on + strand, within AZOBR_RS17020 at 572.858 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM remove 569,883 - AZOBR_RS17000 0.70 +0.8 569,985 - AZOBR_RS17000 0.75 +0.8 570,122 + AZOBR_RS17000 0.82 -1.8 570,122 + AZOBR_RS17000 0.82 -0.7 570,135 + AZOBR_RS17000 0.83 -0.3 570,136 - AZOBR_RS17000 0.83 -0.5 570,136 - AZOBR_RS17000 0.83 -1.0 570,136 - AZOBR_RS17000 0.83 +0.2 570,219 - AZOBR_RS17000 0.87 -1.7 570,272 + AZOBR_RS17000 0.90 -0.6 570,272 + AZOBR_RS17000 0.90 -1.6 570,272 + AZOBR_RS17000 0.90 -0.4 570,272 + AZOBR_RS17000 0.90 -0.3 570,272 + AZOBR_RS17000 0.90 +1.0 570,272 + AZOBR_RS17000 0.90 +0.8 570,272 + AZOBR_RS17000 0.90 +0.4 570,273 - AZOBR_RS17000 0.90 +0.2 570,273 - AZOBR_RS17000 0.90 +0.8 570,273 - AZOBR_RS17000 0.90 +0.8 570,491 - +0.7 570,502 + -1.2 570,503 - +0.2 570,503 - -0.2 570,503 - -1.5 570,610 + -0.7 570,611 - -0.2 570,611 - +0.4 570,615 + +0.4 570,615 + +0.2 570,616 - +0.5 570,620 + -0.3 570,620 + -1.2 570,621 - +1.1 570,621 - +0.6 570,621 - +0.6 570,621 - -0.9 570,625 + -0.9 570,625 + +0.3 570,625 + +0.5 570,626 - -0.5 570,809 + -1.8 570,809 + +0.1 570,810 - +1.1 570,810 - -0.5 570,917 + AZOBR_RS17005 0.13 -0.5 571,079 + AZOBR_RS17005 0.27 +0.5 571,079 + AZOBR_RS17005 0.27 -0.5 571,211 + AZOBR_RS17005 0.39 -0.4 571,211 + AZOBR_RS17005 0.39 -0.3 571,370 + AZOBR_RS17005 0.53 -0.8 571,376 + AZOBR_RS17005 0.54 -2.0 571,523 + AZOBR_RS17005 0.67 -0.1 571,523 + AZOBR_RS17005 0.67 -0.8 571,524 - AZOBR_RS17005 0.67 -0.7 571,583 + AZOBR_RS17005 0.72 +0.0 571,584 - AZOBR_RS17005 0.72 -0.0 571,584 - AZOBR_RS17005 0.72 -0.2 571,649 + AZOBR_RS17005 0.78 -0.4 571,650 - AZOBR_RS17005 0.78 -0.3 571,664 + AZOBR_RS17005 0.79 +0.2 571,665 - AZOBR_RS17005 0.79 +0.6 571,665 - AZOBR_RS17005 0.79 -0.2 572,432 - AZOBR_RS17015 0.40 +0.9 572,857 + AZOBR_RS17020 0.46 +0.0 572,858 - AZOBR_RS17020 0.47 -1.2 572,873 - AZOBR_RS17020 0.51 -0.8 572,873 - AZOBR_RS17020 0.51 -1.7 572,873 - AZOBR_RS17020 0.51 +0.2
Or see this region's nucleotide sequence