Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00220

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00215 and AZOBR_RS00220 are separated by 81 nucleotidesAZOBR_RS00220 and AZOBR_RS00225 are separated by 121 nucleotides AZOBR_RS00215: AZOBR_RS00215 - MFS transporter, at 35,788 to 37,098 _RS00215 AZOBR_RS00220: AZOBR_RS00220 - hypothetical protein, at 37,180 to 37,431 _RS00220 AZOBR_RS00225: AZOBR_RS00225 - purine biosynthesis protein purH, at 37,553 to 39,157 _RS00225 Position (kb) 37 38Strain fitness (log2 ratio) -1 0 1at 36.253 kb on + strand, within AZOBR_RS00215at 36.511 kb on + strand, within AZOBR_RS00215at 36.511 kb on + strand, within AZOBR_RS00215at 36.551 kb on - strand, within AZOBR_RS00215at 37.033 kb on - strandat 37.125 kb on + strandat 37.125 kb on + strandat 37.429 kb on + strandat 37.429 kb on + strandat 37.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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36,253 + AZOBR_RS00215 0.35 -0.1
36,511 + AZOBR_RS00215 0.55 -0.4
36,511 + AZOBR_RS00215 0.55 -0.1
36,551 - AZOBR_RS00215 0.58 -0.2
37,033 - -0.4
37,125 + +0.8
37,125 + +0.6
37,429 + +0.3
37,429 + +1.1
37,429 + +1.3

Or see this region's nucleotide sequence