Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22295

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22285 and AZOBR_RS22290 are separated by 20 nucleotidesAZOBR_RS22290 and AZOBR_RS22295 are separated by 16 nucleotidesAZOBR_RS22295 and AZOBR_RS22300 are separated by 28 nucleotides AZOBR_RS22285: AZOBR_RS22285 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 3,840 to 5,843 _RS22285 AZOBR_RS22290: AZOBR_RS22290 - enoyl-CoA hydratase, at 5,864 to 6,658 _RS22290 AZOBR_RS22295: AZOBR_RS22295 - methylcrotonoyl-CoA carboxylase, at 6,675 to 8,282 _RS22295 AZOBR_RS22300: AZOBR_RS22300 - acyl-CoA dehydrogenase, at 8,311 to 9,444 _RS22300 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -1 0 1 2at 7.433 kb on - strand, within AZOBR_RS22295at 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.367 kb on - strandat 8.394 kb on - strandat 8.394 kb on - strandat 8.661 kb on - strand, within AZOBR_RS22300at 8.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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7,433 - AZOBR_RS22295 0.47 -1.5
8,313 - +0.5
8,313 - -0.6
8,313 - +2.7
8,313 - -0.6
8,313 - -0.2
8,367 - +0.0
8,394 - +0.4
8,394 - +0.2
8,661 - AZOBR_RS22300 0.31 +0.8
8,797 - -0.5

Or see this region's nucleotide sequence