Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22135

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22130 and AZOBR_RS22135 are separated by 172 nucleotidesAZOBR_RS22135 and AZOBR_RS22140 are separated by 13 nucleotides AZOBR_RS22130: AZOBR_RS22130 - acriflavin resistance protein, at 1,730,343 to 1,733,465 _RS22130 AZOBR_RS22135: AZOBR_RS22135 - transglutaminase, at 1,733,638 to 1,734,591 _RS22135 AZOBR_RS22140: AZOBR_RS22140 - hypothetical protein, at 1,734,605 to 1,737,094 _RS22140 Position (kb) 1733 1734 1735Strain fitness (log2 ratio) -1 0 1 2at 1732.827 kb on + strand, within AZOBR_RS22130at 1732.827 kb on + strand, within AZOBR_RS22130at 1732.878 kb on + strand, within AZOBR_RS22130at 1732.879 kb on - strand, within AZOBR_RS22130at 1732.879 kb on - strand, within AZOBR_RS22130at 1732.879 kb on - strand, within AZOBR_RS22130at 1732.923 kb on + strand, within AZOBR_RS22130at 1732.924 kb on - strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.956 kb on + strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1732.957 kb on - strand, within AZOBR_RS22130at 1733.079 kb on + strand, within AZOBR_RS22130at 1733.079 kb on + strand, within AZOBR_RS22130at 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.382 kb on + strandat 1733.383 kb on - strandat 1733.918 kb on + strand, within AZOBR_RS22135at 1733.930 kb on + strand, within AZOBR_RS22135at 1734.189 kb on - strand, within AZOBR_RS22135at 1734.356 kb on + strand, within AZOBR_RS22135at 1734.356 kb on + strand, within AZOBR_RS22135at 1734.356 kb on + strand, within AZOBR_RS22135at 1734.357 kb on - strand, within AZOBR_RS22135at 1734.357 kb on - strand, within AZOBR_RS22135at 1734.377 kb on + strand, within AZOBR_RS22135at 1734.377 kb on + strand, within AZOBR_RS22135at 1734.378 kb on - strand, within AZOBR_RS22135at 1734.507 kb on - strandat 1734.636 kb on + strandat 1735.278 kb on + strand, within AZOBR_RS22140at 1735.279 kb on - strand, within AZOBR_RS22140at 1735.350 kb on + strand, within AZOBR_RS22140at 1735.558 kb on - strand, within AZOBR_RS22140

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,732,827 + AZOBR_RS22130 0.80 -0.8
1,732,827 + AZOBR_RS22130 0.80 -0.5
1,732,878 + AZOBR_RS22130 0.81 +0.2
1,732,879 - AZOBR_RS22130 0.81 +0.8
1,732,879 - AZOBR_RS22130 0.81 +1.5
1,732,879 - AZOBR_RS22130 0.81 -0.2
1,732,923 + AZOBR_RS22130 0.83 +0.2
1,732,924 - AZOBR_RS22130 0.83 -0.1
1,732,956 + AZOBR_RS22130 0.84 -0.1
1,732,956 + AZOBR_RS22130 0.84 -0.6
1,732,956 + AZOBR_RS22130 0.84 -0.4
1,732,956 + AZOBR_RS22130 0.84 +0.2
1,732,957 - AZOBR_RS22130 0.84 +0.5
1,732,957 - AZOBR_RS22130 0.84 +0.8
1,732,957 - AZOBR_RS22130 0.84 +0.2
1,732,957 - AZOBR_RS22130 0.84 +1.4
1,732,957 - AZOBR_RS22130 0.84 -0.5
1,732,957 - AZOBR_RS22130 0.84 -0.8
1,732,957 - AZOBR_RS22130 0.84 -1.5
1,733,079 + AZOBR_RS22130 0.88 -0.4
1,733,079 + AZOBR_RS22130 0.88 +0.3
1,733,382 + +0.3
1,733,382 + -0.1
1,733,382 + -1.6
1,733,382 + +0.2
1,733,382 + -1.1
1,733,382 + -0.8
1,733,382 + -0.3
1,733,383 - +1.8
1,733,918 + AZOBR_RS22135 0.29 -0.1
1,733,930 + AZOBR_RS22135 0.31 +1.3
1,734,189 - AZOBR_RS22135 0.58 -0.1
1,734,356 + AZOBR_RS22135 0.75 -1.7
1,734,356 + AZOBR_RS22135 0.75 +0.3
1,734,356 + AZOBR_RS22135 0.75 -0.3
1,734,357 - AZOBR_RS22135 0.75 -1.5
1,734,357 - AZOBR_RS22135 0.75 -0.4
1,734,377 + AZOBR_RS22135 0.77 -0.6
1,734,377 + AZOBR_RS22135 0.77 +0.4
1,734,378 - AZOBR_RS22135 0.78 -0.7
1,734,507 - -0.2
1,734,636 + -1.3
1,735,278 + AZOBR_RS22140 0.27 -0.0
1,735,279 - AZOBR_RS22140 0.27 -1.6
1,735,350 + AZOBR_RS22140 0.30 +2.5
1,735,558 - AZOBR_RS22140 0.38 -0.3

Or see this region's nucleotide sequence