Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22125

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22120 and AZOBR_RS22125 are separated by 677 nucleotidesAZOBR_RS22125 and AZOBR_RS22130 are separated by 3 nucleotides AZOBR_RS22120: AZOBR_RS22120 - hypothetical protein, at 1,727,713 to 1,728,528 _RS22120 AZOBR_RS22125: AZOBR_RS22125 - secretion protein, at 1,729,206 to 1,730,339 _RS22125 AZOBR_RS22130: AZOBR_RS22130 - acriflavin resistance protein, at 1,730,343 to 1,733,465 _RS22130 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -2 -1 0 1at 1728.350 kb on + strand, within AZOBR_RS22120at 1728.627 kb on + strandat 1728.627 kb on + strandat 1728.628 kb on - strandat 1728.871 kb on - strandat 1729.105 kb on - strandat 1729.106 kb on + strandat 1729.107 kb on - strandat 1729.201 kb on + strandat 1729.267 kb on - strandat 1729.272 kb on + strandat 1729.893 kb on + strand, within AZOBR_RS22125at 1729.893 kb on + strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.894 kb on - strand, within AZOBR_RS22125at 1729.974 kb on + strand, within AZOBR_RS22125at 1729.974 kb on + strand, within AZOBR_RS22125at 1729.974 kb on + strand, within AZOBR_RS22125at 1730.493 kb on + strandat 1730.493 kb on + strandat 1730.494 kb on - strandat 1730.494 kb on - strandat 1730.494 kb on - strandat 1730.760 kb on + strand, within AZOBR_RS22130at 1730.760 kb on + strand, within AZOBR_RS22130at 1730.760 kb on + strand, within AZOBR_RS22130at 1730.760 kb on + strand, within AZOBR_RS22130at 1731.094 kb on - strand, within AZOBR_RS22130at 1731.094 kb on - strand, within AZOBR_RS22130at 1731.095 kb on + strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130at 1731.096 kb on - strand, within AZOBR_RS22130

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,728,350 + AZOBR_RS22120 0.78 -0.6
1,728,627 + +0.7
1,728,627 + -0.2
1,728,628 - -2.3
1,728,871 - +0.1
1,729,105 - -2.0
1,729,106 + +1.4
1,729,107 - -1.4
1,729,201 + -1.3
1,729,267 - -0.2
1,729,272 + -1.7
1,729,893 + AZOBR_RS22125 0.61 +0.2
1,729,893 + AZOBR_RS22125 0.61 +0.1
1,729,894 - AZOBR_RS22125 0.61 +0.6
1,729,894 - AZOBR_RS22125 0.61 -2.1
1,729,894 - AZOBR_RS22125 0.61 +0.1
1,729,894 - AZOBR_RS22125 0.61 -0.2
1,729,974 + AZOBR_RS22125 0.68 +0.2
1,729,974 + AZOBR_RS22125 0.68 -0.4
1,729,974 + AZOBR_RS22125 0.68 +0.6
1,730,493 + +0.1
1,730,493 + +0.4
1,730,494 - -0.9
1,730,494 - +0.9
1,730,494 - -0.4
1,730,760 + AZOBR_RS22130 0.13 -0.6
1,730,760 + AZOBR_RS22130 0.13 -1.0
1,730,760 + AZOBR_RS22130 0.13 -1.0
1,730,760 + AZOBR_RS22130 0.13 -1.3
1,731,094 - AZOBR_RS22130 0.24 +0.2
1,731,094 - AZOBR_RS22130 0.24 +0.1
1,731,095 + AZOBR_RS22130 0.24 -0.5
1,731,096 - AZOBR_RS22130 0.24 +0.9
1,731,096 - AZOBR_RS22130 0.24 -0.4
1,731,096 - AZOBR_RS22130 0.24 +0.7
1,731,096 - AZOBR_RS22130 0.24 +1.0
1,731,096 - AZOBR_RS22130 0.24 +0.6
1,731,096 - AZOBR_RS22130 0.24 +0.2

Or see this region's nucleotide sequence