Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21150

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21145 and AZOBR_RS21150 are separated by 92 nucleotidesAZOBR_RS21150 and AZOBR_RS21155 are separated by 111 nucleotides AZOBR_RS21145: AZOBR_RS21145 - NADP-dependent malic enzyme, at 1,525,083 to 1,527,401 _RS21145 AZOBR_RS21150: AZOBR_RS21150 - N-acetylglucosaminyltransferase, at 1,527,494 to 1,529,161 _RS21150 AZOBR_RS21155: AZOBR_RS21155 - hypothetical protein, at 1,529,273 to 1,529,974 _RS21155 Position (kb) 1527 1528 1529 1530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1526.607 kb on + strand, within AZOBR_RS21145at 1526.608 kb on - strand, within AZOBR_RS21145at 1526.619 kb on + strand, within AZOBR_RS21145at 1526.874 kb on + strand, within AZOBR_RS21145at 1526.875 kb on - strand, within AZOBR_RS21145at 1526.875 kb on - strand, within AZOBR_RS21145at 1526.875 kb on - strand, within AZOBR_RS21145at 1527.034 kb on - strand, within AZOBR_RS21145at 1527.612 kb on - strandat 1528.197 kb on + strand, within AZOBR_RS21150at 1528.197 kb on + strand, within AZOBR_RS21150at 1528.197 kb on + strand, within AZOBR_RS21150at 1528.198 kb on - strand, within AZOBR_RS21150at 1528.198 kb on - strand, within AZOBR_RS21150at 1528.826 kb on + strand, within AZOBR_RS21150at 1529.463 kb on + strand, within AZOBR_RS21155at 1529.658 kb on - strand, within AZOBR_RS21155at 1529.690 kb on + strand, within AZOBR_RS21155at 1529.691 kb on - strand, within AZOBR_RS21155at 1529.765 kb on + strand, within AZOBR_RS21155at 1529.765 kb on + strand, within AZOBR_RS21155at 1529.792 kb on + strand, within AZOBR_RS21155at 1529.793 kb on - strand, within AZOBR_RS21155at 1529.793 kb on - strand, within AZOBR_RS21155at 1529.805 kb on - strand, within AZOBR_RS21155at 1530.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,526,607 + AZOBR_RS21145 0.66 -0.8
1,526,608 - AZOBR_RS21145 0.66 -0.3
1,526,619 + AZOBR_RS21145 0.66 +1.3
1,526,874 + AZOBR_RS21145 0.77 -0.9
1,526,875 - AZOBR_RS21145 0.77 +1.1
1,526,875 - AZOBR_RS21145 0.77 -0.3
1,526,875 - AZOBR_RS21145 0.77 +2.1
1,527,034 - AZOBR_RS21145 0.84 -3.0
1,527,612 - +0.8
1,528,197 + AZOBR_RS21150 0.42 -0.3
1,528,197 + AZOBR_RS21150 0.42 +0.4
1,528,197 + AZOBR_RS21150 0.42 +0.8
1,528,198 - AZOBR_RS21150 0.42 -0.0
1,528,198 - AZOBR_RS21150 0.42 -1.7
1,528,826 + AZOBR_RS21150 0.80 -0.1
1,529,463 + AZOBR_RS21155 0.27 -0.4
1,529,658 - AZOBR_RS21155 0.55 +0.1
1,529,690 + AZOBR_RS21155 0.59 -0.5
1,529,691 - AZOBR_RS21155 0.60 +0.1
1,529,765 + AZOBR_RS21155 0.70 -0.9
1,529,765 + AZOBR_RS21155 0.70 -0.3
1,529,792 + AZOBR_RS21155 0.74 +1.5
1,529,793 - AZOBR_RS21155 0.74 +1.1
1,529,793 - AZOBR_RS21155 0.74 +0.5
1,529,805 - AZOBR_RS21155 0.76 +0.1
1,530,135 - +0.5

Or see this region's nucleotide sequence