Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21135

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21130 and AZOBR_RS21135 overlap by 4 nucleotidesAZOBR_RS21135 and AZOBR_RS21140 are separated by 292 nucleotides AZOBR_RS21130: AZOBR_RS21130 - Fis family transcriptional regulator, at 1,520,182 to 1,521,561 _RS21130 AZOBR_RS21135: AZOBR_RS21135 - histidine kinase, at 1,521,558 to 1,523,324 _RS21135 AZOBR_RS21140: AZOBR_RS21140 - C4-dicarboxylate ABC transporter, at 1,523,617 to 1,524,918 _RS21140 Position (kb) 1521 1522 1523 1524Strain fitness (log2 ratio) -1 0 1 2at 1520.633 kb on + strand, within AZOBR_RS21130at 1520.634 kb on - strand, within AZOBR_RS21130at 1522.516 kb on + strand, within AZOBR_RS21135at 1522.843 kb on + strand, within AZOBR_RS21135at 1522.846 kb on + strand, within AZOBR_RS21135at 1522.847 kb on - strand, within AZOBR_RS21135at 1522.919 kb on - strand, within AZOBR_RS21135at 1523.008 kb on + strand, within AZOBR_RS21135at 1523.008 kb on + strand, within AZOBR_RS21135at 1523.009 kb on - strand, within AZOBR_RS21135at 1523.009 kb on - strand, within AZOBR_RS21135at 1523.653 kb on + strandat 1523.654 kb on - strandat 1523.875 kb on + strand, within AZOBR_RS21140at 1523.875 kb on + strand, within AZOBR_RS21140at 1523.875 kb on + strand, within AZOBR_RS21140at 1523.904 kb on - strand, within AZOBR_RS21140at 1523.904 kb on - strand, within AZOBR_RS21140at 1523.995 kb on + strand, within AZOBR_RS21140at 1523.995 kb on + strand, within AZOBR_RS21140at 1523.995 kb on + strand, within AZOBR_RS21140at 1524.269 kb on - strand, within AZOBR_RS21140at 1524.316 kb on + strand, within AZOBR_RS21140at 1524.316 kb on + strand, within AZOBR_RS21140

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,520,633 + AZOBR_RS21130 0.33 -1.2
1,520,634 - AZOBR_RS21130 0.33 -1.1
1,522,516 + AZOBR_RS21135 0.54 -0.7
1,522,843 + AZOBR_RS21135 0.73 +0.9
1,522,846 + AZOBR_RS21135 0.73 +0.2
1,522,847 - AZOBR_RS21135 0.73 +1.1
1,522,919 - AZOBR_RS21135 0.77 -0.6
1,523,008 + AZOBR_RS21135 0.82 -0.4
1,523,008 + AZOBR_RS21135 0.82 -0.4
1,523,009 - AZOBR_RS21135 0.82 -1.3
1,523,009 - AZOBR_RS21135 0.82 -0.3
1,523,653 + +0.8
1,523,654 - +1.1
1,523,875 + AZOBR_RS21140 0.20 -1.5
1,523,875 + AZOBR_RS21140 0.20 -0.3
1,523,875 + AZOBR_RS21140 0.20 +0.1
1,523,904 - AZOBR_RS21140 0.22 +0.5
1,523,904 - AZOBR_RS21140 0.22 +2.1
1,523,995 + AZOBR_RS21140 0.29 -1.7
1,523,995 + AZOBR_RS21140 0.29 +2.1
1,523,995 + AZOBR_RS21140 0.29 -1.5
1,524,269 - AZOBR_RS21140 0.50 +1.1
1,524,316 + AZOBR_RS21140 0.54 -1.5
1,524,316 + AZOBR_RS21140 0.54 +0.7

Or see this region's nucleotide sequence