Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19085

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19075 and AZOBR_RS19080 overlap by 1 nucleotidesAZOBR_RS19080 and AZOBR_RS19085 are separated by 98 nucleotidesAZOBR_RS19085 and AZOBR_RS19090 are separated by 161 nucleotidesAZOBR_RS19090 and AZOBR_RS19095 overlap by 4 nucleotides AZOBR_RS19075: AZOBR_RS19075 - Fe(II)-dependent oxygenase, at 1,049,834 to 1,050,520 _RS19075 AZOBR_RS19080: AZOBR_RS19080 - hypothetical protein, at 1,050,520 to 1,051,191 _RS19080 AZOBR_RS19085: AZOBR_RS19085 - glycolate oxidase, at 1,051,290 to 1,052,378 _RS19085 AZOBR_RS19090: AZOBR_RS19090 - iron ABC transporter ATP-binding protein, at 1,052,540 to 1,053,298 _RS19090 AZOBR_RS19095: AZOBR_RS19095 - enterobactin ABC transporter permease, at 1,053,295 to 1,054,278 _RS19095 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -2 -1 0 1 2at 1050.404 kb on + strand, within AZOBR_RS19075at 1050.405 kb on - strand, within AZOBR_RS19075at 1050.748 kb on + strand, within AZOBR_RS19080at 1050.748 kb on + strand, within AZOBR_RS19080at 1050.859 kb on + strandat 1051.241 kb on + strandat 1051.242 kb on - strandat 1051.320 kb on + strandat 1051.371 kb on + strandat 1051.371 kb on + strandat 1051.371 kb on + strandat 1051.686 kb on + strand, within AZOBR_RS19085at 1051.686 kb on + strand, within AZOBR_RS19085at 1051.686 kb on + strand, within AZOBR_RS19085at 1051.686 kb on + strand, within AZOBR_RS19085at 1051.709 kb on + strand, within AZOBR_RS19085at 1051.709 kb on + strand, within AZOBR_RS19085at 1051.710 kb on - strand, within AZOBR_RS19085at 1051.710 kb on - strand, within AZOBR_RS19085at 1052.541 kb on + strandat 1052.542 kb on - strandat 1052.542 kb on - strandat 1052.547 kb on + strandat 1052.547 kb on + strandat 1052.547 kb on + strandat 1052.548 kb on - strandat 1052.550 kb on + strandat 1052.832 kb on + strand, within AZOBR_RS19090at 1052.832 kb on + strand, within AZOBR_RS19090at 1052.832 kb on + strand, within AZOBR_RS19090at 1052.833 kb on - strand, within AZOBR_RS19090at 1052.833 kb on - strand, within AZOBR_RS19090at 1052.833 kb on - strand, within AZOBR_RS19090at 1052.833 kb on - strand, within AZOBR_RS19090at 1052.833 kb on - strand, within AZOBR_RS19090at 1052.934 kb on + strand, within AZOBR_RS19090at 1053.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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1,050,404 + AZOBR_RS19075 0.83 -0.2
1,050,405 - AZOBR_RS19075 0.83 +0.8
1,050,748 + AZOBR_RS19080 0.34 +0.0
1,050,748 + AZOBR_RS19080 0.34 +1.1
1,050,859 + +0.6
1,051,241 + -0.7
1,051,242 - +0.7
1,051,320 + +1.0
1,051,371 + +0.1
1,051,371 + -0.4
1,051,371 + -0.4
1,051,686 + AZOBR_RS19085 0.36 -0.2
1,051,686 + AZOBR_RS19085 0.36 -0.4
1,051,686 + AZOBR_RS19085 0.36 +0.7
1,051,686 + AZOBR_RS19085 0.36 -0.1
1,051,709 + AZOBR_RS19085 0.38 +0.2
1,051,709 + AZOBR_RS19085 0.38 -0.6
1,051,710 - AZOBR_RS19085 0.39 +0.7
1,051,710 - AZOBR_RS19085 0.39 -0.0
1,052,541 + +0.5
1,052,542 - -0.3
1,052,542 - +0.3
1,052,547 + -1.5
1,052,547 + -0.2
1,052,547 + +2.3
1,052,548 - +0.0
1,052,550 + -0.1
1,052,832 + AZOBR_RS19090 0.38 +1.6
1,052,832 + AZOBR_RS19090 0.38 +0.2
1,052,832 + AZOBR_RS19090 0.38 +0.5
1,052,833 - AZOBR_RS19090 0.39 -2.7
1,052,833 - AZOBR_RS19090 0.39 -0.2
1,052,833 - AZOBR_RS19090 0.39 +0.2
1,052,833 - AZOBR_RS19090 0.39 +0.3
1,052,833 - AZOBR_RS19090 0.39 -0.3
1,052,934 + AZOBR_RS19090 0.52 +0.7
1,053,268 - -0.9

Or see this region's nucleotide sequence