Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS17485

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS17485 and AZOBR_RS17490 are separated by 138 nucleotides AZOBR_RS17485: AZOBR_RS17485 - hypothetical protein, at 671,515 to 673,479 _RS17485 AZOBR_RS17490: AZOBR_RS17490 - hypothetical protein, at 673,618 to 675,555 _RS17490 Position (kb) 671 672 673 674Strain fitness (log2 ratio) -2 -1 0 1 2at 670.549 kb on + strandat 671.936 kb on - strand, within AZOBR_RS17485at 672.347 kb on + strand, within AZOBR_RS17485at 672.348 kb on - strand, within AZOBR_RS17485at 672.348 kb on - strand, within AZOBR_RS17485at 672.348 kb on - strand, within AZOBR_RS17485at 672.348 kb on - strand, within AZOBR_RS17485at 672.515 kb on + strand, within AZOBR_RS17485at 672.516 kb on - strand, within AZOBR_RS17485at 672.720 kb on - strand, within AZOBR_RS17485at 673.568 kb on + strandat 673.569 kb on - strandat 673.569 kb on - strandat 673.781 kb on - strandat 673.781 kb on - strandat 674.144 kb on - strand, within AZOBR_RS17490at 674.233 kb on + strand, within AZOBR_RS17490at 674.450 kb on - strand, within AZOBR_RS17490at 674.450 kb on - strand, within AZOBR_RS17490

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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670,549 + -1.8
671,936 - AZOBR_RS17485 0.21 -0.2
672,347 + AZOBR_RS17485 0.42 +0.3
672,348 - AZOBR_RS17485 0.42 -0.1
672,348 - AZOBR_RS17485 0.42 -0.1
672,348 - AZOBR_RS17485 0.42 +0.3
672,348 - AZOBR_RS17485 0.42 -0.4
672,515 + AZOBR_RS17485 0.51 +1.1
672,516 - AZOBR_RS17485 0.51 +0.6
672,720 - AZOBR_RS17485 0.61 +2.1
673,568 + +0.6
673,569 - +0.1
673,569 - -0.1
673,781 - -1.3
673,781 - -0.1
674,144 - AZOBR_RS17490 0.27 +0.3
674,233 + AZOBR_RS17490 0.32 +0.1
674,450 - AZOBR_RS17490 0.43 +0.1
674,450 - AZOBR_RS17490 0.43 -1.0

Or see this region's nucleotide sequence