Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12840

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12835 and AZOBR_RS12840 are separated by 12 nucleotidesAZOBR_RS12840 and AZOBR_RS12845 are separated by 174 nucleotidesAZOBR_RS12845 and AZOBR_RS12850 are separated by 60 nucleotides AZOBR_RS12835: AZOBR_RS12835 - RNA methyltransferase, at 2,706,115 to 2,706,993 _RS12835 AZOBR_RS12840: AZOBR_RS12840 - hypothetical protein, at 2,707,006 to 2,707,455 _RS12840 AZOBR_RS12845: AZOBR_RS12845 - methionine sulfoxide reductase A, at 2,707,630 to 2,708,262 _RS12845 AZOBR_RS12850: AZOBR_RS12850 - hypothetical protein, at 2,708,323 to 2,709,426 _RS12850 Position (kb) 2707 2708Strain fitness (log2 ratio) -2 -1 0 1 2at 2706.010 kb on - strandat 2706.019 kb on - strandat 2706.706 kb on + strand, within AZOBR_RS12835at 2706.706 kb on + strand, within AZOBR_RS12835at 2706.707 kb on - strand, within AZOBR_RS12835at 2707.238 kb on + strand, within AZOBR_RS12840at 2707.238 kb on + strand, within AZOBR_RS12840at 2707.572 kb on + strandat 2707.573 kb on - strandat 2707.879 kb on + strand, within AZOBR_RS12845at 2707.880 kb on - strand, within AZOBR_RS12845at 2707.934 kb on - strand, within AZOBR_RS12845at 2707.934 kb on - strand, within AZOBR_RS12845at 2708.050 kb on + strand, within AZOBR_RS12845at 2708.050 kb on + strand, within AZOBR_RS12845at 2708.050 kb on + strand, within AZOBR_RS12845at 2708.050 kb on + strand, within AZOBR_RS12845at 2708.050 kb on + strand, within AZOBR_RS12845at 2708.050 kb on + strand, within AZOBR_RS12845at 2708.051 kb on - strand, within AZOBR_RS12845at 2708.101 kb on + strand, within AZOBR_RS12845at 2708.170 kb on + strand, within AZOBR_RS12845at 2708.170 kb on + strand, within AZOBR_RS12845at 2708.170 kb on + strand, within AZOBR_RS12845at 2708.171 kb on - strand, within AZOBR_RS12845at 2708.171 kb on - strand, within AZOBR_RS12845at 2708.171 kb on - strand, within AZOBR_RS12845at 2708.173 kb on + strand, within AZOBR_RS12845at 2708.185 kb on + strand, within AZOBR_RS12845at 2708.185 kb on + strand, within AZOBR_RS12845at 2708.197 kb on + strand, within AZOBR_RS12845at 2708.197 kb on + strand, within AZOBR_RS12845at 2708.197 kb on + strand, within AZOBR_RS12845at 2708.197 kb on + strand, within AZOBR_RS12845at 2708.197 kb on + strand, within AZOBR_RS12845at 2708.198 kb on - strand, within AZOBR_RS12845at 2708.221 kb on + strandat 2708.222 kb on - strandat 2708.324 kb on + strandat 2708.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,706,010 - +0.1
2,706,019 - -0.3
2,706,706 + AZOBR_RS12835 0.67 +0.3
2,706,706 + AZOBR_RS12835 0.67 +0.0
2,706,707 - AZOBR_RS12835 0.67 +0.6
2,707,238 + AZOBR_RS12840 0.52 -2.6
2,707,238 + AZOBR_RS12840 0.52 -1.8
2,707,572 + -0.4
2,707,573 - -2.6
2,707,879 + AZOBR_RS12845 0.39 +0.7
2,707,880 - AZOBR_RS12845 0.39 -0.2
2,707,934 - AZOBR_RS12845 0.48 -0.7
2,707,934 - AZOBR_RS12845 0.48 -0.4
2,708,050 + AZOBR_RS12845 0.66 -1.2
2,708,050 + AZOBR_RS12845 0.66 +0.1
2,708,050 + AZOBR_RS12845 0.66 -2.2
2,708,050 + AZOBR_RS12845 0.66 -0.5
2,708,050 + AZOBR_RS12845 0.66 -0.2
2,708,050 + AZOBR_RS12845 0.66 -0.3
2,708,051 - AZOBR_RS12845 0.67 +0.3
2,708,101 + AZOBR_RS12845 0.74 -1.1
2,708,170 + AZOBR_RS12845 0.85 -0.8
2,708,170 + AZOBR_RS12845 0.85 -0.2
2,708,170 + AZOBR_RS12845 0.85 -0.4
2,708,171 - AZOBR_RS12845 0.85 +0.2
2,708,171 - AZOBR_RS12845 0.85 -0.0
2,708,171 - AZOBR_RS12845 0.85 +1.4
2,708,173 + AZOBR_RS12845 0.86 -0.6
2,708,185 + AZOBR_RS12845 0.88 +1.2
2,708,185 + AZOBR_RS12845 0.88 +1.2
2,708,197 + AZOBR_RS12845 0.90 -0.5
2,708,197 + AZOBR_RS12845 0.90 +0.4
2,708,197 + AZOBR_RS12845 0.90 +0.3
2,708,197 + AZOBR_RS12845 0.90 +0.9
2,708,197 + AZOBR_RS12845 0.90 -0.4
2,708,198 - AZOBR_RS12845 0.90 +0.1
2,708,221 + +0.2
2,708,222 - -0.6
2,708,324 + +2.1
2,708,375 - +0.5

Or see this region's nucleotide sequence