Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12795

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12795 and AZOBR_RS12800 are separated by 445 nucleotides AZOBR_RS12795: AZOBR_RS12795 - FIST domain containing protein, at 2,699,271 to 2,700,407 _RS12795 AZOBR_RS12800: AZOBR_RS12800 - acetaldehyde dehydrogenase, at 2,700,853 to 2,701,236 _RS12800 Position (kb) 2699 2700 2701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2698.489 kb on + strandat 2698.490 kb on - strandat 2698.684 kb on + strandat 2698.684 kb on + strandat 2698.684 kb on + strandat 2698.685 kb on - strandat 2698.850 kb on + strandat 2698.850 kb on + strandat 2698.850 kb on + strandat 2698.850 kb on + strandat 2698.850 kb on + strandat 2698.851 kb on - strandat 2698.851 kb on - strandat 2699.283 kb on + strandat 2699.284 kb on - strandat 2699.326 kb on + strandat 2699.326 kb on + strandat 2699.326 kb on + strandat 2699.564 kb on - strand, within AZOBR_RS12795at 2699.564 kb on - strand, within AZOBR_RS12795at 2699.615 kb on - strand, within AZOBR_RS12795at 2699.615 kb on - strand, within AZOBR_RS12795at 2700.591 kb on + strandat 2700.591 kb on + strandat 2700.591 kb on + strandat 2700.591 kb on + strandat 2700.591 kb on + strandat 2700.591 kb on + strandat 2700.592 kb on - strandat 2700.592 kb on - strandat 2700.592 kb on - strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.593 kb on + strandat 2700.594 kb on - strandat 2700.594 kb on - strandat 2700.594 kb on - strandat 2700.594 kb on - strandat 2700.594 kb on - strandat 2700.598 kb on + strandat 2700.598 kb on + strandat 2700.599 kb on - strandat 2700.599 kb on - strandat 2700.599 kb on - strandat 2700.658 kb on + strandat 2700.658 kb on + strandat 2700.658 kb on + strandat 2700.739 kb on + strandat 2701.019 kb on + strand, within AZOBR_RS12800at 2701.020 kb on - strand, within AZOBR_RS12800at 2701.043 kb on + strand, within AZOBR_RS12800at 2701.044 kb on - strand, within AZOBR_RS12800at 2701.044 kb on - strand, within AZOBR_RS12800at 2701.044 kb on - strand, within AZOBR_RS12800at 2701.173 kb on - strand, within AZOBR_RS12800

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,698,489 + -1.3
2,698,490 - -1.5
2,698,684 + +0.1
2,698,684 + -1.5
2,698,684 + +0.5
2,698,685 - -0.0
2,698,850 + -0.5
2,698,850 + -0.9
2,698,850 + -0.4
2,698,850 + +0.0
2,698,850 + -3.3
2,698,851 - -1.8
2,698,851 - -0.5
2,699,283 + -0.7
2,699,284 - +0.6
2,699,326 + -0.6
2,699,326 + -1.3
2,699,326 + +0.1
2,699,564 - AZOBR_RS12795 0.26 +0.3
2,699,564 - AZOBR_RS12795 0.26 -0.1
2,699,615 - AZOBR_RS12795 0.30 -1.8
2,699,615 - AZOBR_RS12795 0.30 -3.4
2,700,591 + -0.1
2,700,591 + -0.4
2,700,591 + +0.5
2,700,591 + -1.8
2,700,591 + +1.9
2,700,591 + +1.7
2,700,592 - +0.0
2,700,592 - +0.1
2,700,592 - -1.5
2,700,593 + -0.1
2,700,593 + +0.8
2,700,593 + -0.8
2,700,593 + -0.5
2,700,593 + -0.2
2,700,593 + -0.8
2,700,593 + +0.7
2,700,593 + -1.0
2,700,594 - +0.8
2,700,594 - +0.8
2,700,594 - +0.5
2,700,594 - +1.0
2,700,594 - -0.2
2,700,598 + -1.4
2,700,598 + +0.9
2,700,599 - -0.7
2,700,599 - +1.1
2,700,599 - -0.4
2,700,658 + -0.8
2,700,658 + +0.1
2,700,658 + +0.6
2,700,739 + -0.9
2,701,019 + AZOBR_RS12800 0.43 -2.1
2,701,020 - AZOBR_RS12800 0.43 -2.2
2,701,043 + AZOBR_RS12800 0.49 -0.5
2,701,044 - AZOBR_RS12800 0.50 +0.9
2,701,044 - AZOBR_RS12800 0.50 +0.6
2,701,044 - AZOBR_RS12800 0.50 -1.1
2,701,173 - AZOBR_RS12800 0.83 +1.4

Or see this region's nucleotide sequence