Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10675

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10665 and AZOBR_RS10670 are separated by 39 nucleotidesAZOBR_RS10670 and AZOBR_RS10675 are separated by 33 nucleotidesAZOBR_RS10675 and AZOBR_RS10680 are separated by 228 nucleotides AZOBR_RS10665: AZOBR_RS10665 - RNA polymerase sigma 70, at 2,237,442 to 2,238,326 _RS10665 AZOBR_RS10670: AZOBR_RS10670 - membrane protein, at 2,238,366 to 2,238,893 _RS10670 AZOBR_RS10675: AZOBR_RS10675 - serine/threonine protein kinase, at 2,238,927 to 2,240,954 _RS10675 AZOBR_RS10680: AZOBR_RS10680 - adenylosuccinate synthetase, at 2,241,183 to 2,242,475 _RS10680 Position (kb) 2238 2239 2240 2241Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2238.222 kb on + strand, within AZOBR_RS10665at 2238.222 kb on + strand, within AZOBR_RS10665at 2238.333 kb on - strandat 2238.586 kb on + strand, within AZOBR_RS10670at 2238.586 kb on + strand, within AZOBR_RS10670at 2238.586 kb on + strand, within AZOBR_RS10670at 2238.586 kb on + strand, within AZOBR_RS10670at 2238.587 kb on - strand, within AZOBR_RS10670at 2238.670 kb on + strandat 2238.671 kb on - strand, within AZOBR_RS10670at 2238.745 kb on + strand, within AZOBR_RS10670at 2238.745 kb on + strand, within AZOBR_RS10670at 2238.746 kb on - strand, within AZOBR_RS10670at 2238.746 kb on - strand, within AZOBR_RS10670at 2239.378 kb on + strand, within AZOBR_RS10675at 2239.379 kb on - strand, within AZOBR_RS10675at 2239.564 kb on + strand, within AZOBR_RS10675at 2239.564 kb on + strand, within AZOBR_RS10675at 2240.035 kb on + strand, within AZOBR_RS10675at 2240.036 kb on - strand, within AZOBR_RS10675at 2240.036 kb on - strand, within AZOBR_RS10675at 2240.480 kb on - strand, within AZOBR_RS10675at 2240.482 kb on + strand, within AZOBR_RS10675at 2240.482 kb on + strand, within AZOBR_RS10675at 2240.834 kb on - strandat 2241.104 kb on + strandat 2241.104 kb on + strandat 2241.105 kb on - strandat 2241.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,238,222 + AZOBR_RS10665 0.88 -0.5
2,238,222 + AZOBR_RS10665 0.88 +2.1
2,238,333 - -0.8
2,238,586 + AZOBR_RS10670 0.42 -1.2
2,238,586 + AZOBR_RS10670 0.42 +1.5
2,238,586 + AZOBR_RS10670 0.42 -1.8
2,238,586 + AZOBR_RS10670 0.42 +1.1
2,238,587 - AZOBR_RS10670 0.42 +0.8
2,238,670 + +0.5
2,238,671 - AZOBR_RS10670 0.58 +0.0
2,238,745 + AZOBR_RS10670 0.72 -2.1
2,238,745 + AZOBR_RS10670 0.72 +2.9
2,238,746 - AZOBR_RS10670 0.72 -1.6
2,238,746 - AZOBR_RS10670 0.72 +0.2
2,239,378 + AZOBR_RS10675 0.22 +0.5
2,239,379 - AZOBR_RS10675 0.22 -2.2
2,239,564 + AZOBR_RS10675 0.31 -0.4
2,239,564 + AZOBR_RS10675 0.31 -2.6
2,240,035 + AZOBR_RS10675 0.55 -0.4
2,240,036 - AZOBR_RS10675 0.55 +0.8
2,240,036 - AZOBR_RS10675 0.55 -0.9
2,240,480 - AZOBR_RS10675 0.77 +0.1
2,240,482 + AZOBR_RS10675 0.77 -0.6
2,240,482 + AZOBR_RS10675 0.77 +0.3
2,240,834 - +0.1
2,241,104 + -1.2
2,241,104 + +1.1
2,241,105 - +0.1
2,241,105 - -0.3

Or see this region's nucleotide sequence