Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09665

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09650 and AZOBR_RS09655 are separated by 19 nucleotidesAZOBR_RS09655 and AZOBR_RS09660 are separated by 50 nucleotidesAZOBR_RS09660 and AZOBR_RS09665 are separated by 87 nucleotidesAZOBR_RS09665 and AZOBR_RS09670 are separated by 424 nucleotides AZOBR_RS09650: AZOBR_RS09650 - lysine transporter LysE, at 2,024,157 to 2,024,780 _RS09650 AZOBR_RS09655: AZOBR_RS09655 - AsnC family transcriptional regulator, at 2,024,800 to 2,025,255 _RS09655 AZOBR_RS09660: AZOBR_RS09660 - Rubredoxin-2 (modular protein), at 2,025,306 to 2,025,599 _RS09660 AZOBR_RS09665: AZOBR_RS09665 - hypothetical protein, at 2,025,687 to 2,027,006 _RS09665 AZOBR_RS09670: AZOBR_RS09670 - hypothetical protein, at 2,027,431 to 2,027,961 _RS09670 Position (kb) 2025 2026 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2at 2024.704 kb on - strand, within AZOBR_RS09650at 2024.951 kb on + strand, within AZOBR_RS09655at 2024.951 kb on + strand, within AZOBR_RS09655at 2024.951 kb on + strand, within AZOBR_RS09655at 2024.952 kb on - strand, within AZOBR_RS09655at 2024.952 kb on - strand, within AZOBR_RS09655at 2024.952 kb on - strand, within AZOBR_RS09655at 2024.952 kb on - strand, within AZOBR_RS09655at 2025.433 kb on + strand, within AZOBR_RS09660at 2025.434 kb on - strand, within AZOBR_RS09660at 2025.434 kb on - strand, within AZOBR_RS09660at 2025.632 kb on + strandat 2025.632 kb on + strandat 2025.633 kb on - strandat 2025.633 kb on - strandat 2026.966 kb on + strandat 2026.967 kb on - strandat 2026.967 kb on - strandat 2027.055 kb on - strandat 2027.102 kb on + strandat 2027.103 kb on - strandat 2027.245 kb on + strandat 2027.245 kb on + strandat 2027.246 kb on - strandat 2027.246 kb on - strandat 2027.273 kb on - strandat 2027.566 kb on + strand, within AZOBR_RS09670at 2027.567 kb on - strand, within AZOBR_RS09670at 2027.900 kb on - strand, within AZOBR_RS09670

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,024,704 - AZOBR_RS09650 0.88 +0.6
2,024,951 + AZOBR_RS09655 0.33 +0.6
2,024,951 + AZOBR_RS09655 0.33 +2.2
2,024,951 + AZOBR_RS09655 0.33 -1.4
2,024,952 - AZOBR_RS09655 0.33 -1.4
2,024,952 - AZOBR_RS09655 0.33 -1.3
2,024,952 - AZOBR_RS09655 0.33 -0.9
2,024,952 - AZOBR_RS09655 0.33 +0.1
2,025,433 + AZOBR_RS09660 0.43 +0.6
2,025,434 - AZOBR_RS09660 0.44 -0.6
2,025,434 - AZOBR_RS09660 0.44 +1.0
2,025,632 + +0.9
2,025,632 + +1.9
2,025,633 - -0.6
2,025,633 - +1.8
2,026,966 + -2.0
2,026,967 - +0.0
2,026,967 - -1.2
2,027,055 - +0.9
2,027,102 + -1.1
2,027,103 - +1.2
2,027,245 + +1.2
2,027,245 + -0.1
2,027,246 - +1.2
2,027,246 - -0.4
2,027,273 - -0.4
2,027,566 + AZOBR_RS09670 0.25 -0.8
2,027,567 - AZOBR_RS09670 0.26 +1.2
2,027,900 - AZOBR_RS09670 0.88 -0.8

Or see this region's nucleotide sequence