Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09590

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09585 and AZOBR_RS09590 are separated by 119 nucleotidesAZOBR_RS09590 and AZOBR_RS09595 are separated by 92 nucleotides AZOBR_RS09585: AZOBR_RS09585 - hypothetical protein, at 2,009,835 to 2,010,989 _RS09585 AZOBR_RS09590: AZOBR_RS09590 - putative Zn-ribbon-containing protein involved in phosphonate metabolism PhnA-like protein, at 2,011,109 to 2,011,465 _RS09590 AZOBR_RS09595: AZOBR_RS09595 - C4-dicarboxylate ABC transporter permease, at 2,011,558 to 2,012,856 _RS09595 Position (kb) 2011 2012Strain fitness (log2 ratio) -2 -1 0 1 2at 2011.078 kb on + strandat 2011.154 kb on + strand, within AZOBR_RS09590at 2011.155 kb on - strand, within AZOBR_RS09590at 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.607 kb on + strandat 2011.608 kb on - strandat 2011.608 kb on - strandat 2011.608 kb on - strandat 2011.707 kb on - strand, within AZOBR_RS09595at 2012.003 kb on + strand, within AZOBR_RS09595at 2012.003 kb on + strand, within AZOBR_RS09595at 2012.003 kb on + strand, within AZOBR_RS09595at 2012.003 kb on + strand, within AZOBR_RS09595at 2012.004 kb on - strand, within AZOBR_RS09595at 2012.004 kb on - strand, within AZOBR_RS09595at 2012.004 kb on - strand, within AZOBR_RS09595at 2012.004 kb on - strand, within AZOBR_RS09595at 2012.103 kb on - strand, within AZOBR_RS09595at 2012.103 kb on - strand, within AZOBR_RS09595at 2012.103 kb on - strand, within AZOBR_RS09595at 2012.151 kb on - strand, within AZOBR_RS09595at 2012.381 kb on + strand, within AZOBR_RS09595at 2012.382 kb on - strand, within AZOBR_RS09595

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,011,078 + -0.1
2,011,154 + AZOBR_RS09590 0.13 -0.5
2,011,155 - AZOBR_RS09590 0.13 -1.2
2,011,559 + +0.6
2,011,559 + +0.1
2,011,559 + -0.2
2,011,559 + -0.4
2,011,559 + -0.4
2,011,559 + +1.0
2,011,559 + +2.7
2,011,560 - -0.2
2,011,560 - +1.6
2,011,560 - -0.7
2,011,560 - -0.3
2,011,560 - -1.3
2,011,560 - +1.8
2,011,607 + -0.5
2,011,608 - -0.5
2,011,608 - -1.9
2,011,608 - +0.2
2,011,707 - AZOBR_RS09595 0.11 -0.2
2,012,003 + AZOBR_RS09595 0.34 +0.3
2,012,003 + AZOBR_RS09595 0.34 -0.9
2,012,003 + AZOBR_RS09595 0.34 +1.6
2,012,003 + AZOBR_RS09595 0.34 +0.4
2,012,004 - AZOBR_RS09595 0.34 -0.9
2,012,004 - AZOBR_RS09595 0.34 -1.8
2,012,004 - AZOBR_RS09595 0.34 +1.3
2,012,004 - AZOBR_RS09595 0.34 +0.7
2,012,103 - AZOBR_RS09595 0.42 +0.7
2,012,103 - AZOBR_RS09595 0.42 -2.1
2,012,103 - AZOBR_RS09595 0.42 -1.0
2,012,151 - AZOBR_RS09595 0.46 -0.6
2,012,381 + AZOBR_RS09595 0.63 -0.1
2,012,382 - AZOBR_RS09595 0.63 +0.3

Or see this region's nucleotide sequence