Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07050

Experiment: 3-octanone 6.3476 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07040 and AZOBR_RS07045 are separated by 56 nucleotidesAZOBR_RS07045 and AZOBR_RS07050 are separated by 27 nucleotidesAZOBR_RS07050 and AZOBR_RS07055 are separated by 180 nucleotidesAZOBR_RS07055 and AZOBR_RS07060 are separated by 144 nucleotides AZOBR_RS07040: AZOBR_RS07040 - phosphoglucosamine mutase, at 1,489,681 to 1,491,048 _RS07040 AZOBR_RS07045: AZOBR_RS07045 - phosphomethylpyrimidine kinase, at 1,491,105 to 1,491,905 _RS07045 AZOBR_RS07050: AZOBR_RS07050 - transcriptional regulator, at 1,491,933 to 1,493,327 _RS07050 AZOBR_RS07055: AZOBR_RS07055 - hypothetical protein, at 1,493,508 to 1,493,720 _RS07055 AZOBR_RS07060: AZOBR_RS07060 - hypothetical protein, at 1,493,865 to 1,494,188 _RS07060 Position (kb) 1491 1492 1493 1494Strain fitness (log2 ratio) -1 0 1 2 3at 1491.046 kb on + strandat 1491.046 kb on + strandat 1491.047 kb on - strandat 1491.903 kb on + strandat 1492.331 kb on - strand, within AZOBR_RS07050at 1492.439 kb on - strand, within AZOBR_RS07050at 1492.439 kb on - strandat 1492.612 kb on + strand, within AZOBR_RS07050at 1492.613 kb on - strand, within AZOBR_RS07050at 1492.735 kb on + strand, within AZOBR_RS07050at 1492.736 kb on - strand, within AZOBR_RS07050at 1492.736 kb on - strand, within AZOBR_RS07050at 1492.922 kb on - strand, within AZOBR_RS07050at 1493.539 kb on - strand, within AZOBR_RS07055at 1493.539 kb on - strand, within AZOBR_RS07055at 1493.539 kb on - strand, within AZOBR_RS07055at 1493.775 kb on + strandat 1493.776 kb on - strandat 1493.776 kb on - strandat 1493.827 kb on - strandat 1493.844 kb on - strandat 1493.972 kb on - strand, within AZOBR_RS07060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
remove
1,491,046 + +0.1
1,491,046 + +0.6
1,491,047 - -0.4
1,491,903 + -0.5
1,492,331 - AZOBR_RS07050 0.29 -0.1
1,492,439 - AZOBR_RS07050 0.36 -1.0
1,492,439 - +2.8
1,492,612 + AZOBR_RS07050 0.49 -0.3
1,492,613 - AZOBR_RS07050 0.49 +0.1
1,492,735 + AZOBR_RS07050 0.57 -1.5
1,492,736 - AZOBR_RS07050 0.58 +1.4
1,492,736 - AZOBR_RS07050 0.58 +0.9
1,492,922 - AZOBR_RS07050 0.71 +0.1
1,493,539 - AZOBR_RS07055 0.15 -0.8
1,493,539 - AZOBR_RS07055 0.15 -0.6
1,493,539 - AZOBR_RS07055 0.15 -0.3
1,493,775 + +0.4
1,493,776 - -0.9
1,493,776 - -0.7
1,493,827 - +0.1
1,493,844 - -0.3
1,493,972 - AZOBR_RS07060 0.33 +0.3

Or see this region's nucleotide sequence